Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10410
         (821 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3421| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.0  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               28   8.0  

>SB_3421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 36  LTTDFSKNKIFRLSLDFNSSL*NE---NRLTNK*ERDAKRFCLNLF 164
           + T +S+ ++  L LD +    NE   N  T K  ++++RFCL++F
Sbjct: 1   MATRYSREEVLALVLDESDPEYNEDYDNPTTTKTGKNSRRFCLSIF 46


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
 Frame = -2

Query: 802 TAMCISHSIFHFISVNLKKS*VS---VCILL*IKVSYMQIFFFS*VHSFIRFSRKLHIIY 632
           ++ CI H +  ++S   + S +S   +C ++ + +SY          S I  S   HI+ 
Sbjct: 79  SSSCICHIVIVYLSYRHRASVISSSCICHIVIVHLSYRHRA------SVISSSCICHIVI 132

Query: 631 T*VSNLQRQYALSNLCTCKI*QFHLIHR 548
             +S   R   +S+ C C I   HL +R
Sbjct: 133 VHLSYRHRASVISSSCICHIVIVHLSYR 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,744,933
Number of Sequences: 59808
Number of extensions: 406792
Number of successful extensions: 712
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)