Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10408
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   31   0.69 
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               30   1.2  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)                      28   4.8  
SB_867| Best HMM Match : Leo1 (HMM E-Value=0)                          28   6.4  
SB_12125| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.5  

>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +1

Query: 76  IFVQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELTSDGYLVVTA 225
           I + G  ++ E +H    S+F  +Y+LP     + V++ +T DG L + A
Sbjct: 64  IKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +2

Query: 320 KDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCL 499
           KD+ RNLG+  D   E+  S G++   G +  E T      + +    Q  P  ++SF L
Sbjct: 303 KDEDRNLGKNKDERHEEY-SKGNENMDGIKPFELTPEIEAIQSTTTDEQNKPNTEQSFLL 361

Query: 500 SD 505
           S+
Sbjct: 362 SE 363


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 281 RDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGTRGEER 421
           R WR+V   R C +  S    +  D GA  + +  + C TGT  E R
Sbjct: 343 RVWRTVPPQRVCLEVPSEKARKIPDDGALTVRTEATGC-TGTANEIR 388


>SB_34759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 404 TRGEERTDHALRTR*SDRKRQRDPTRKRSF 493
           TRG ER++HA +     RK +++ T+  SF
Sbjct: 240 TRGHERSEHAEKAAELKRKEKKEATKHNSF 269


>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -3

Query: 338 GFYCRLFYRLVLLVRSASLDNRYNALCIFVLSTFSLIGA 222
           G+ CRL  RLV +VR     + Y    I +L+ F L+ A
Sbjct: 238 GYDCRLRVRLVRIVRKFDRYSEYGQAVIILLTCFFLLVA 276


>SB_1181| Best HMM Match : DUF1604 (HMM E-Value=0)
          Length = 1035

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 88  GSQEAKEDDHDVFASQFFHTYSLPVNSSAA 177
           G+   +E+D DV+A      Y +P N SAA
Sbjct: 245 GTGVFEEEDDDVYAQDIMSNYDIPKNISAA 274


>SB_867| Best HMM Match : Leo1 (HMM E-Value=0)
          Length = 591

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 344 RFYDSGAEDISSSG-SDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKR 487
           R Y S  +D    G  D  +   GEER  +A   + S+ +   +P+RKR
Sbjct: 517 RAYSSEEDDGEEEGLGDLESDNEGEERLMNAKEGKDSEEESIEEPSRKR 565


>SB_12125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 347 NVQGFYCRLFYRLVLLVRSASLDNR-YNALCIFVLSTFSLIGAV 219
           +V   +  LFY LVLL+   S+  R    L +   S F L+GA+
Sbjct: 39  SVAASFALLFYFLVLLITGVSVTERCRKLLSLETTSIFFLVGAI 82


>SB_5925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 347 NVQGFYCRLFYRLVLLVRSASLDNR-YNALCIFVLSTFSLIGAV 219
           +V   +  LFY LVLL+   S+  R    L +   S F L+GA+
Sbjct: 39  SVAASFALLFYFLVLLITGVSVTERCRKLLSLETTSIFFLVGAI 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,536,875
Number of Sequences: 59808
Number of extensions: 214196
Number of successful extensions: 818
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)