Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10406
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  

>SB_51785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 19/79 (24%), Positives = 42/79 (53%)
 Frame = +1

Query: 427 LNIKVNYI*TNVFVVELRVGLFSIVGLRVLNVFKYFIRGRQRKSGLTYPHNHVYYVYCNV 606
           L+++ NY   ++ V +L VG FSI  + V ++F Y +  R+ +    Y    ++  + ++
Sbjct: 47  LHMRTNYFLVSLAVADLLVGAFSI-PMYVYDIFTY-LESRRSRLHTIYNAIDIFTSFASI 104

Query: 607 FKIL*ILIQNRPIHSFTHR 663
           F ++ I ++     +F H+
Sbjct: 105 FALVLIALERAYSVNFPHK 123


>SB_37379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 270 VNVPTLVWSSSIRVNFYAIENVKKLALSTQLT 365
           V  PTL  SS  +  FY  EN KKL +ST++T
Sbjct: 107 VYAPTLTSSSDAKDAFYMWEN-KKLTISTKIT 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,032,133
Number of Sequences: 59808
Number of extensions: 398389
Number of successful extensions: 825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)