Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10405
         (814 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)                94   1e-19
SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/75 (56%), Positives = 52/75 (69%)
 Frame = +1

Query: 1   LKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXX 180
           + A+ D+ K   S+++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGVE     
Sbjct: 171 VNAYEDVEKCIDSKKIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHVD 230

Query: 181 XXXXXXXAPGGHLGR 225
                   PGGHLGR
Sbjct: 231 RLNLLKLCPGGHLGR 245



 Score = 38.7 bits (86), Expect = 0.006
 Identities = 28/70 (40%), Positives = 35/70 (50%)
 Frame = +3

Query: 312 NLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKR 491
           NLP  ++ + D   LLK      + R P  R  RA  K NPL N   ML+LNPYA   KR
Sbjct: 220 NLPGVELQHVDRLNLLKLCPGGHLGR-PKAR--RAIHKKNPLKNLGTMLRLNPYAKSAKR 276

Query: 492 KAILELAEGR 521
             +L +   R
Sbjct: 277 AEMLTVERRR 286


>SB_54601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1718

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/49 (28%), Positives = 29/49 (59%)
 Frame = +3

Query: 285 TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLN 431
           TP++Q   F   + +++N D++RL  S+    + ++ N RVI+++   N
Sbjct: 802 TPTEQDAEFTANEAEVSNQDISRLSSSEPSPIIPKSINNRVIKSSALSN 850


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
 Frame = +3

Query: 360 KSDEIRKVLRAPNKRV---IRATRKLNPLTNNKAMLKL 464
           +SD I K+    NK++   ++    L+ LTNNKA LKL
Sbjct: 27  QSDVIHKIPNEANKQIGLRVKCLALLDYLTNNKAQLKL 64


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,834
Number of Sequences: 59808
Number of extensions: 381129
Number of successful extensions: 1264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)