Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10403
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_21109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 3   VLVLYDLCATLFIL*NVFAQFRIIQIHENVHRSKHITFI-IYCSEKTRLRF 152
           +++LY L AT+  L N+F  F I+Q H  V R  +  F+ +  S+ T L F
Sbjct: 16  LIILYALIATIGFLGNLFVCFIILQ-HRPVRRPMNWLFLNLAISDSTILVF 65


>SB_3124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -1

Query: 487 EEGYVIALSKHRGVEL-IPKPKKKEIVVF---APRSQC 386
           E+GY ++L KH+ V + +  PK KE+VV     P S C
Sbjct: 57  EKGYPLSLRKHKEVHVPVVYPKCKELVVILYDQPLSSC 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,708,557
Number of Sequences: 59808
Number of extensions: 384452
Number of successful extensions: 746
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)