Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10402
         (773 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               29   5.5  
SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)          29   5.5  
SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  

>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +1

Query: 268 VAFVWRLVETRAATLLSVPLRLSYGGLVLVSHLYTVISRFCVLDQYLSYFFLSV 429
           V F+  LV    ATL+  P  L+  G V  S L+ V    C    +LSYFF+ +
Sbjct: 231 VGFMLGLVPFCGATLVMFPPNLAVHGHVTGSILHIVEEEKCTHSFFLSYFFVDM 284


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +1

Query: 271 AFVWRLVETRAATLLSVPLRLSYGGLVLVSHLYT 372
           A + RL +  A  L++VP+     GLV + HLYT
Sbjct: 367 AILVRLSQVSATVLMAVPMLEFLSGLVHLPHLYT 400


>SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)
          Length = 522

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -2

Query: 373 PCINAKLAPSHRTINEAARSAVLPLVSPLNAIQKLQKANSFTLVLPANAPRVQRRPVLTV 194
           P IN+ L   + + N ++   V P +     + +     +FTLV P  AP++Q  P L +
Sbjct: 127 PTINSSLLDINSSPNSSSILHVPPTLDT-RILNQFWPPLNFTLVSPCIAPKIQESPYLLI 185


>SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 434 NITDKKK*LRYWSKTQKRDITVYKCETSTKPPYDKRSGTLSSVAARVST 288
           N TD    L+ +++T    +    C T+T P   +R+ +  +V  R+ T
Sbjct: 80  NFTDTDYALKLYNQTSLESMRAPSCPTTTSPAKRRRTPSCPAVETRIRT 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,593,352
Number of Sequences: 59808
Number of extensions: 470435
Number of successful extensions: 1039
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)