Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10400
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               43   6e-09
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.9  
SB_7447| Best HMM Match : CHGN (HMM E-Value=0)                         27   5.2  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.2  
SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_41705| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)                    26   9.0  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 43.2 bits (97), Expect(2) = 6e-09
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = +3

Query: 3   GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 95
           GKHVV V  R+ILP+P+ K+R   KQKRPRS
Sbjct: 91  GKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120



 Score = 33.5 bits (73), Expect(2) = 6e-09
 Identities = 14/23 (60%), Positives = 20/23 (86%), Gaps = 1/23 (4%)
 Frame = +3

Query: 207 HLDKNQQTTIEHKVDT-SSLYTR 272
           HLDK QQTTI+HK++T S++Y +
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKK 143



 Score = 31.9 bits (69), Expect = 0.18
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +2

Query: 260 SVYKKLTGREVTFEFP 307
           +VYKKLTG++V FEFP
Sbjct: 139 TVYKKLTGKDVVFEFP 154


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 232 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 125
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
          Length = 918

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 75  KQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTI 236
           K+KRP       ++DAI     F     G   + KLD   L  +  D +++ T+
Sbjct: 799 KRKRPSIEKFAIIFDAITTKARFARYKNGSSKKHKLDKRPLFAMDSDSDEELTV 852


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 27  DRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILED 134
           D  I+P P H+T   N +K      L S+ D   +D
Sbjct: 434 DELIIPPPRHRTETHNDEKFNVEERLRSLLDVAADD 469


>SB_57953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 712

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = +3

Query: 21  VGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR-IRVKLDGSQL 197
           + DR+ + K   + R+ +      + TL  V DA+ E+L  P +++G R +  K+     
Sbjct: 517 MSDRRSMSKHGVQWRILSIYYTDTTVTLEEVKDAVKEELDGPGKLLGYRAMHKKIRQQHD 576

Query: 198 IKVHLDKNQQTTIEHKVDTSSLYTRS 275
           + V  D      +E  +D   L  RS
Sbjct: 577 LNVTRDLVHDVMLE--LDPEGLQNRS 600


>SB_41705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 9   HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 131
           H   V DR+ LP      +V +++   + R +  VY  +LE
Sbjct: 84  HDPLVRDRRALPPSRSADQVTDREAIDQCRDILGVYSGVLE 124


>SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)
          Length = 598

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = +3

Query: 12  VVFVGDRKILPKPSH---KTRVANKQKRPRSRTLTSVYDAILEDLVF 143
           V+F  +RK+L K SH   K +V   Q+R   + LTS +D +   ++F
Sbjct: 43  VIFTQERKLLTKHSHDLVKVQVIFTQER---KLLTSSHDLLEVQVIF 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,786,500
Number of Sequences: 59808
Number of extensions: 195901
Number of successful extensions: 525
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)