Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10399
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_53807| Best HMM Match : MCM (HMM E-Value=0)                         32   0.31 
SB_34989| Best HMM Match : Tropomyosin (HMM E-Value=3.2)               29   3.8  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     29   3.8  
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  28   6.6  

>SB_43377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 25/63 (39%), Positives = 34/63 (53%)
 Frame = +1

Query: 1   AAAGELPLTTLRRYSAYXXXXXXXXXXXXXXXXXXXXYVLMRTGALQHERQADKRLYIPI 180
           A  GEL L+ L++Y +Y                    YVLMR+GA +HER  +K++ IPI
Sbjct: 563 ANEGELSLSFLKKYISYCKSKCGPRLSESAAEKLKNRYVLMRSGAKEHERDTEKKISIPI 622

Query: 181 TVR 189
           TVR
Sbjct: 623 TVR 625


>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
          Length = 789

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +1

Query: 172 IPITVRQLEAIVHISESLAKMQLQPF 249
           IPITVR +E+++ ++ES AKM L+ +
Sbjct: 645 IPITVRHIESMIRMAESHAKMHLREY 670


>SB_34989| Best HMM Match : Tropomyosin (HMM E-Value=3.2)
          Length = 314

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 112 YVLMRTGALQHERQADKRLYIPITVRQLEAIVHISESLA 228
           Y+L+R    +H R +   L++P+T+ + ++   I++ LA
Sbjct: 192 YLLLREEQQRHVRPSTDHLFVPLTITENDSTEDIAKELA 230


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 131 ARCNTSDKPTSVSTYPSPLGN 193
           +R + S  PTS STYPSP G+
Sbjct: 408 SRHSHSSSPTSSSTYPSPFGS 428


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +3

Query: 249 CDEAHVNEALRLFQVSTLDAAMTGSLAGAEGFTTEEDHEMLTRVEKQLKRRFAVGSQVSE 428
           C E H  + +++ Q+S+       SL   E F T++ +  +  V+  L+   A+G+   +
Sbjct: 270 CKEKHGVQFVQMVQISSAWRRAYASLHKREHFNTKQSNGKV-EVKSTLRHDIAIGAH--Q 326

Query: 429 QTIIQDFLRQKYP 467
           +T++   L Q YP
Sbjct: 327 RTVVWG-LTQSYP 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,125,903
Number of Sequences: 59808
Number of extensions: 209833
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)