Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10397
         (845 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   2e-20
SB_44713| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   9e-05
SB_29485| Best HMM Match : PT (HMM E-Value=4.8)                        29   4.7  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
 Frame = +1

Query: 256 LSHLKDQRLSRLFAEKKVEMERPDETLD-WFNLFVLHQNHADRGHSNYIPEGVLPNFLDL 432
           L  ++D+RL R F   KV+M RP E  D WFN FVLHQN A  GH+NYIPE  L  FLDL
Sbjct: 142 LGSVRDERLHRTFVNNKVKMLRPKEDPDSWFNAFVLHQNRAKHGHTNYIPEKFLDTFLDL 201

Query: 433 VVWGHEHDSHICPMKGNKT 489
           VVWGHEH+  I P + + T
Sbjct: 202 VVWGHEHECLIDPRQSDDT 220



 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 29/46 (63%), Positives = 34/46 (73%), Gaps = 4/46 (8%)
 Frame = +2

Query: 2   ELLSDQIKNFSRT----VNYEDPNLNISYPILSIHGNHDDPVGQGS 127
           E LSDQ  NF+      VNYEDPNLN+S P+ SIHGNHDDP G+G+
Sbjct: 89  EFLSDQSINFANNRFPWVNYEDPNLNVSIPVFSIHGNHDDPAGKGA 134



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
 Frame = +3

Query: 513 QPGSTVATSLAAGEALPKHCGLLEIHKGN-FKLT 611
           QPGSTVATSL+ GE+  KH G+LEI     FK+T
Sbjct: 228 QPGSTVATSLSPGESKQKHVGILEIRPDKAFKMT 261


>SB_44713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = +3

Query: 567 HCGLLEIHKGN-FKLTPLPLQTVRPFIFKTIVLSEENIGSEDVNENEKVQEFL 722
           H G+LEI     FK+T +PLQTVRPF  + I+LS+ ++   D  + E++  FL
Sbjct: 2   HVGILEIRPDKAFKMTKVPLQTVRPFYMEDIILSDTDL---DPADEERIYAFL 51


>SB_29485| Best HMM Match : PT (HMM E-Value=4.8)
          Length = 280

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 298 EKKVEMERPDETLDWFNLFVLHQNHADRGHSNYIPEGVLPNFLDL 432
           E KV M+R D + D  +  VL+  H  RG+S+++ E  +   LD+
Sbjct: 191 ENKV-MQRRDMSRDLSHTTVLYVTHRHRGNSDFVVENNVTKRLDI 234


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 314 WRDPMKHWTGSI 349
           W+DP  HWTGSI
Sbjct: 656 WQDPSLHWTGSI 667


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,386,657
Number of Sequences: 59808
Number of extensions: 509076
Number of successful extensions: 1006
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)