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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10395
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)                87   2e-17
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.023
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)                36   0.053
SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)                36   0.053
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 33   0.21 
SB_34330| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_53772| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6)                   30   2.6  
SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.6  
SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)               29   6.1  
SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4)                      29   6.1  
SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 28   8.1  

>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1091

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 45/87 (51%), Positives = 61/87 (70%), Gaps = 3/87 (3%)
 Frame = +2

Query: 2    DFAQRVTQL---AEVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELH 172
            DF+ R+ QL   ++ A+A  +  L+N+ +WLGG+  PEAYITATRQ VAQAN+WSLEEL 
Sbjct: 881  DFSDRIKQLQAISQAANASGSSGLKNLSIWLGGMFVPEAYITATRQFVAQANNWSLEELA 940

Query: 173  LQVTIPDPGAPTENAQTEWSFSVTGLK 253
            L+VT+ +  A  +    + SF VTGLK
Sbjct: 941  LEVTVAN-SASDKLKMDDCSFGVTGLK 966



 Score = 73.7 bits (173), Expect = 2e-13
 Identities = 41/79 (51%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
 Frame = +1

Query: 250  KTQGATVKGNRLLLTNTIMVDLPLTVLTWVR--GPEPASNSHTLTLPVYLNSARTELLFT 423
            K QGA+   N+L LT TI  DLPLT L W+R         S  +TLPVYLN +RTELLFT
Sbjct: 966  KLQGASCYNNQLELTTTISTDLPLTSLKWIRLLSSSDKPQSTMVTLPVYLNQSRTELLFT 1025

Query: 424  VRLPV-APGQEPHAFYERG 477
            V + V       H FYERG
Sbjct: 1026 VDMAVTGESARGHRFYERG 1044


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 25/82 (30%), Positives = 41/82 (50%)
 Frame = +2

Query: 5    FAQRVTQLAEVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVT 184
            F   + ++ E+    +   L NV VWL G  NP++++TA  Q +A+ N W L+++ LQV 
Sbjct: 4535 FVDLLLRIKELEQWTSDFCLPNV-VWLSGFFNPQSFLTAIEQSMARKNEWPLDKMALQVD 4593

Query: 185  IPDPGAPTENAQTEWSFSVTGL 250
            +        N+       V GL
Sbjct: 4594 VTKKNKEDFNSPPREGAYVHGL 4615


>SB_2338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1289

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 32   EVADAVAAKRLQNVPVWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVTIPDP-GAPT 208
            +V+D  A  R +   +WLGGL NP A +T+ R   A  +    +E+ L+ +I    G+  
Sbjct: 952  KVSDEPALGRARLKTIWLGGLANPAAIVTSLRHEKAAMSGVDYDEVSLRCSISKKYGSRD 1011

Query: 209  ENAQTEWSFSVTGL 250
               + +    V+GL
Sbjct: 1012 SEGEEDDGIVVSGL 1025


>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 2532

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 77   VWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVTI 187
            +WL GL  PE+Y+TA  Q   + + W L+   L  T+
Sbjct: 2384 IWLSGLHIPESYLTALVQATCRKHGWPLDRSTLYTTV 2420


>SB_20418| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 670

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 77  VWLGGLLNPEAYITATRQCVAQANSWSLEELHLQVTI 187
           +WL GL  PE+Y+TA  Q   + + W L+   L  T+
Sbjct: 344 IWLSGLHIPESYLTALVQATCRKHGWPLDRSTLYTTV 380


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 80   WLGGLLNPEAYITATRQCVAQAN-SWSLEE--LHLQVT 184
            W+ G  NP+ ++TA RQ V +A+  W+L+   LH  VT
Sbjct: 1112 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVLHNDVT 1149


>SB_34330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 80  WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
           W+ G  NP+ ++TA RQ V +A+  W+L+ + L
Sbjct: 27  WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVGL 59



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 301 IMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAPGQEPHAFYERGV 480
           +  +LP+  +  V    P  +      PVY    RT+L +   L +   Q P  +  RGV
Sbjct: 106 LFTNLPVVHVYAVNSTAP-KDPRLYQCPVYKKPQRTDLTYITPLWLKTVQNPDHWIMRGV 164

Query: 481 ALL 489
           ALL
Sbjct: 165 ALL 167


>SB_53772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 80  WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
           W+ G  NP+ ++TA RQ V +A+  W+L+ + L
Sbjct: 35  WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVL 67


>SB_19322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4994

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 80   WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
            W+ G  NP+ ++TA RQ V +A+  W+L+ + L
Sbjct: 4945 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVL 4977


>SB_38291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 80  WLGGLLNPEAYITATRQCVAQAN-SWSLEELHL 175
           W+ G  NP+ ++TA RQ V +A+  W+L+ + L
Sbjct: 139 WMTGFFNPQGFLTAMRQEVTRAHKGWALDSVVL 171



 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 301 IMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAPGQEPHAFYERGV 480
           +  +LP+  +  V    P  +      PVY    RT+L +   L +   Q P  +  RGV
Sbjct: 218 LFTNLPVVHVYAVNSTAP-KDPRLYQCPVYKKPQRTDLTYITPLWLKTVQNPDHWIMRGV 276

Query: 481 ALL 489
           ALL
Sbjct: 277 ALL 279


>SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6)
          Length = 393

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/82 (23%), Positives = 34/82 (41%)
 Frame = -2

Query: 540 KRGRVASNV*LVESSRSEQGDSSLVERVRLLSGRDGQPHREQQLRAGAVQVHGESQRVRI 361
           KR ++  ++ + ES RS +      +R + LS    Q    + +    V++H  S+   +
Sbjct: 106 KRAKIRQDLSMKESQRSRRNS----QRTQALSSSSTQTDNTETVARTVVEIHHSSKHPTV 161

Query: 360 GRGLRTANPSEHSKRQVYHDSV 295
                   P+  S   V HD V
Sbjct: 162 PIATTNGRPTAQSITDVKHDLV 183


>SB_780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 480 DSSLVER-VRLLSGRDGQPHREQQLRAGAVQVHGESQRVRIGRGLRTANPSEHSK 319
           D S  +R +RL    DG   R+  + A  V+   E +R R   G+R A PSE+S+
Sbjct: 14  DESFEDRSLRLSCDDDGDESRQPSVLARGVRTATEIERARKSTGVR-AEPSENSE 67


>SB_37962| Best HMM Match : Tcp10_C (HMM E-Value=5.9e-36)
          Length = 1290

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 489  EQGDSSLVERVRLLSGRDGQPHREQQLRAGAVQVHGESQRVRIGRGLRTANPSEHSKRQ 313
            E+ +  L E V+LL        R +Q +AG  +  G+  R R  +  +TA PSE  + Q
Sbjct: 935  EEQNKELQEEVKLLEKYRLDLWRTEQDKAGNDENSGKETRPRKEKQRKTARPSEQPEYQ 993


>SB_23485| Best HMM Match : PsbJ (HMM E-Value=2.4)
          Length = 497

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +1

Query: 277 NRLLLTNTIMVDLPLTVLTWVRGPEPASNSHTLTLPVYLNSARTELLFTVRLPVAPGQEP 456
           NR L+T ++  DL + VL   R     + S  +  P    S+ TE+         P   P
Sbjct: 5   NRKLVTGSLQEDLKIAVL---REHRKTTKSLRMIDPTIRRSSDTEV---------PPITP 52

Query: 457 HAFYERGVALLTSTALN*L-YITSDTPTLR 543
           +AF+E  V+LLT   ++ L Y T +T   R
Sbjct: 53  NAFWEWSVSLLTGILVSSLFYFTLETRASR 82


>SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 623

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 382 PVYLNSARTELLFTVRLPVAPGQEPHAFYERGVALLTST 498
           PVY    RT+L +   L +   Q P  +  RGVALL  T
Sbjct: 584 PVYKKPRRTDLEYIFCLNLKTVQHPDHWILRGVALLCDT 622


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,256,319
Number of Sequences: 59808
Number of extensions: 501102
Number of successful extensions: 1066
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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