Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30047
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52) 30 1.9
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 29 3.3
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_786| Best HMM Match : EGF (HMM E-Value=0) 29 4.3
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 29 5.7
SB_47381| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_35928| Best HMM Match : Transposase_9 (HMM E-Value=3.6) 29 5.7
SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Frame = +1
Query: 67 YCKSEMAS---TATLIQPSGEL---WKKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDE 228
Y +SE + + L+ P EL WK R L D T L +++ L+K P L E
Sbjct: 737 YSRSEQRALNKSCRLVDPGYELALLWKPDRPPLPNDYATALSRLESVERRLQKDPELAQE 796
Query: 229 WEDACLMTFSEAVASPLRNVKR 294
++ A + A L + +R
Sbjct: 797 YKKAISAYVEKGFARKLSDEER 818
>SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)
Length = 328
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +1
Query: 1 LRSPVRHLNRITKQLVPNWIVT--YCKSEMASTATLIQPSGELWKKIREELNEDVNTRAQ 174
LR VR + + K + N + K M T LI G++ KKIREE E
Sbjct: 47 LREKVRKIVEVGKNALKNNVTQEEVWKEGMKKTNKLI---GDMKKKIREEFKEKQGL-GM 102
Query: 175 DLAAIKEWLRKQPHLPDEWEDACLMTFSEAVASPLRNVKRN 297
+ K + K + +E + L F+E + + ++N+K+N
Sbjct: 103 KIYRYKMHILKDMY--NEMKKHKLYEFAERIKAKIKNLKKN 141
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 133 IREELNEDVNTRAQDLAAIKEWL-RKQPHLPDEWEDACLMTFSEAVASPLRNVKRN 297
+ + LN+ ++Q + + +W RKQ + D++ + + + V SP + +RN
Sbjct: 139 LSQHLNKGTPMKSQKRSVMYQWFERKQKEIADQYSNPGKRLYVDEVESPTKKSRRN 194
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +1
Query: 127 KKIREELNEDVNTRAQDLAAIKEWLRKQPHLPDEWEDACLMTFSEAVASPLRNVKRNLIC 306
+K EEL ED+ +A I+E +KQ + W+ ++ +E+ LR+ ++L
Sbjct: 3042 QKREEELQEDIKQMEDKIAIIEE--KKQEMVEKFWKSQNDLSEAESTIDSLRSENKDL-- 3097
Query: 307 TSR*GLLAQSSSRTE 351
++ L+ Q + R E
Sbjct: 3098 KNKCALITQRAERLE 3112
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 282 KCKKKLDMYFTMRAACPEFFANRDVTRPELMDL-LNRAQGPTLPGLTPQGRRVTIARALD 458
+C+ ++ T R P A RP++ L R PT P TP RR+ I
Sbjct: 1347 RCRGHYEIPVTTRPLTPRRPAGYYFPRPQVTQLPRTRGTRPTTPVFTPSSRRIKIHPQTK 1406
Query: 459 KNL-DTNQLNDVFKL 500
+ L D +L + L
Sbjct: 1407 QELEDEKELAEALAL 1421
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 135 PRGIE*GC---QHQGTGLSCNQGVAEKATPSTR*VGRRV 242
PR +E C HQ + ++C QG K+T S +GR+V
Sbjct: 186 PRPLELTCTQGSHQKSKVTCTQGSYNKSTDSNEALGRKV 224
>SB_47381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Frame = -1
Query: 569 QYVNVSSLFPRLL---HAVLHLRYHCKFEDIIKLVR--VQVLVQCSGDGYSSTLRR 417
Q++ S+ R+L HA++ + YH + +D++KLV+ ++ VQ STL R
Sbjct: 4 QFIRFGSVDVRVLDRHHALVAVAYHRRVKDLLKLVKKSKRISVQLYNPFLDSTLMR 59
>SB_35928| Best HMM Match : Transposase_9 (HMM E-Value=3.6)
Length = 198
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = -2
Query: 787 ALEKTLFSSIFSFKEWVLPMLKYDHPTKGEMR**TCISFQFHWISFLYTNERISSALLVK 608
A+ K +F + SFKEW L + + + + + F F +SF +SAL V+
Sbjct: 41 AIRKDIFVVVQSFKEWTLCFEAKEMYLEDQNK--DLLIFDFR-MSFSAIITARASALFVR 97
Query: 607 SWRRWLGIRIEASST*TSPAYSLDFFTQSYIS 512
+ LG+R + S+ + +L ++S +S
Sbjct: 98 QRYKQLGVRHTSDSSTSESMVNLREASESMVS 129
>SB_24366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Frame = +3
Query: 570 DASILMPSHLRQDF-TSSAEEILSFVYRKLIQ*NWKEIHVYQRISPFVGWSYFNIGKTH- 743
+ S+ P + D T++ +E + ++ K H PF WSY N H
Sbjct: 201 EPSVCDPQLVEADLATTNGDETFKRLQGTVVHIPTKSPHAITGCYPFAKWSYPNTENEHL 260
Query: 744 --SLKEKIEEKSVFSKAGC 794
S+ + + E+ ++ +GC
Sbjct: 261 RYSIFKNLWERGLYITSGC 279
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 49 PNWIVTYCKSEMASTATLIQPSGELWKKIREELNEDVNT 165
P+ VTY KS +T+ L+QPS + EL++ VNT
Sbjct: 995 PSINVTYVKSPSLTTSGLLQPSPS--ANVTTELSKPVNT 1031
>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.3 bits (60), Expect = 7.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 154 PHSIPRGFSSTVPRKAESGSPLMPSHFC 71
P ++P+ ++T+PR + SG P +P+ C
Sbjct: 338 PPTLPKRGTATLPRTSSSGRPSIPTSRC 365
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,096,189
Number of Sequences: 59808
Number of extensions: 563351
Number of successful extensions: 1688
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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