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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20117
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)                       33   0.33 
SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)                   33   0.33 
SB_51094| Best HMM Match : VWA (HMM E-Value=0)                         30   1.7  
SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)           30   2.3  
SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7)                    29   4.0  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 29   4.0  
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   7.0  

>SB_49742| Best HMM Match : Dam (HMM E-Value=5.8)
          Length = 219

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 91 QHTRAYFLESVNDFFQRTSFPNGLNCIPR 5
          +H +    +  N  FQ TSFPNGL C PR
Sbjct: 11 EHRKYLRFKWKNTLFQYTSFPNGLACCPR 39


>SB_15843| Best HMM Match : VWA (HMM E-Value=4.1e-35)
          Length = 1686

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 20/73 (27%), Positives = 34/73 (46%)
 Frame = +3

Query: 477 INIIISHPHKDLIINAPATGVGSPTLI*ILAYPLSTCIFYMDTKFQVNRMHGSVIINGTS 656
           +N ++  P  D++    A+ + S T   ++     TCI  + +KF V   H SVI+ G+S
Sbjct: 523 MNRVVHFPQVDIVFVLSASSMKSSTTFSLM----QTCILKIGSKFGVYTFHYSVILYGSS 578

Query: 657 VKTTVDLYISIDY 695
                D   +  Y
Sbjct: 579 SVKKFDFNTAFPY 591


>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
          Length = 3544

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/73 (26%), Positives = 33/73 (45%)
 Frame = +3

Query: 477 INIIISHPHKDLIINAPATGVGSPTLI*ILAYPLSTCIFYMDTKFQVNRMHGSVIINGTS 656
           +N ++  P  D++    A+ + S T   ++      CI  + +KF V   H SVI+ G+S
Sbjct: 781 MNRVVHFPQIDIVFVLSASSMKSSTTFSLM----QNCILKIGSKFGVYTFHYSVILYGSS 836

Query: 657 VKTTVDLYISIDY 695
                D   +  Y
Sbjct: 837 SVKKFDFNTAFPY 849


>SB_37043| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.00036)
          Length = 1336

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = -1

Query: 323 PSAVPKLSR-GFFLTFSSISKHISLNNHLNQVRFHSNLDSIDRAIRLYLLRKH 168
           P  VP+  R    L  S I  +I    H N V F  +L   D  + LYL R H
Sbjct: 377 PCGVPEAKRFQDHLATSKIELNIVSREHANTVIFSGDLPDPDHRVYLYLARGH 429


>SB_45378| Best HMM Match : DUF843 (HMM E-Value=4.7)
          Length = 228

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 91  QHTRAYFLESVNDFFQRTSFPNGLNCIPR 5
           +H +    +  N  FQ T  PNGL C PR
Sbjct: 34  EHRKYLRFKWKNTLFQYTCLPNGLKCCPR 62


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -2

Query: 427 SGFT*YELHKKTF-SCNNCTIISLPTQIDLETCGRRPAPCPSSRAVSSSLSHPFRS 263
           SG    E  K+ F SCN     SL ++ D   C R P   P  R   + L H  +S
Sbjct: 650 SGIELTERRKRHFVSCNTLGRRSLASRRDSRACARAPKMPPPERQALARLRHTHQS 705


>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 800

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 605 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 635



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 614 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 644



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 623 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 653



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 632 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 662



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 641 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 671



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 650 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 680



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 659 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 689



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 668 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 698



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 677 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 707



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 713 HDHLDLVRDHGHLDLVRDHDHLDLVRDHDHL 743



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 731 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 761



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 740 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 770



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L+R H HL
Sbjct: 749 HDHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 779



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           ++HL+ VR H +LD +     L L R H HL
Sbjct: 686 HDHLDLVRDHDHLDLVRDHDHLDLFRDHDHL 716



 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 251 NNHLNQVRFHSNLDSIDRAIRLYLLRKHQHL 159
           + HL+ VR H +LD +     L L+R H HL
Sbjct: 722 HGHLDLVRDHDHLDLVRDHDHLDLVRDHDHL 752


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,667,681
Number of Sequences: 59808
Number of extensions: 403302
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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