Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20107
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46924| Best HMM Match : WD40 (HMM E-Value=1.7)                      30   2.5  
SB_8290| Best HMM Match : WD40 (HMM E-Value=2)                         30   2.5  
SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_56950| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_56200| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_46924| Best HMM Match : WD40 (HMM E-Value=1.7)
          Length = 134

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 342 PGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKV 452
           P  A+D  QS ++H D  IQ     + N EAP  ++V
Sbjct: 89  PTSAIDDNQSRLRHQDSHIQQPLTRVENLEAPDFKEV 125


>SB_8290| Best HMM Match : WD40 (HMM E-Value=2)
          Length = 233

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 342 PGFAMDPTQSNVKHTDGAIQNDENDLHNQEAPQSQKV 452
           P  A+D  QS ++H D  IQ     + N EAP  ++V
Sbjct: 188 PTSAIDDNQSRLRHQDSHIQQPLTRVENLEAPDFKEV 224


>SB_43236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 419 TQSRSSAITESRRDIRFSTSRGSIPPARNVP-FMMPA-GPQFRP 544
           T + SS  T S  D + STS+GSI   +N+P F +P+  P+ +P
Sbjct: 134 TTAESSTATVSLDDAKPSTSQGSIIDYKNLPSFWVPSLTPEAKP 177


>SB_56950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 643 ALRRGQSDVSPNRSSNSTGTPRAALRESQRDLRDAGIRIR 762
           ALR  +S   P R S  +   +  LR++ R +R+ G+R++
Sbjct: 176 ALREKKSKKGPPRKSLGSEKMKERLRKNARGVRERGVRVK 215


>SB_56200| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 201 EDLRKLFRF*FTETDHKGL-RDAYSKCSTTPSMKQTQNSLPSYLSNLAPGFAMDPTQSNV 377
           EDL ++    F  T +  + + A SKCS T   KQ   S PS+   LA     D + S  
Sbjct: 11  EDLPEMLALPFALTANDSVTQQASSKCSETRFDKQVYTSHPSFSEELAINKHSDTSFSEE 70

Query: 378 KHTD 389
           +  D
Sbjct: 71  ESID 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,966,193
Number of Sequences: 59808
Number of extensions: 423672
Number of successful extensions: 1187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)