Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20101
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)                   32   0.47 
SB_41468| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)              29   5.8  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_43367| Best HMM Match : SAM_1 (HMM E-Value=0.085)
          Length = 325

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 19/60 (31%), Positives = 25/60 (41%)
 Frame = +1

Query: 379 TEFVNENGNPVDVANPPVATSTTGPLQIPQQASTPIVRPEQTCQRQKQWSKAAIKSVREL 558
           T+ +    N V V   P+      PL +P  A TP+ RP  T        +   KSV EL
Sbjct: 98  TDVLLFQSNSVRVLKSPLKDREPAPLPVPTMAPTPVPRPSDTNPPPLPAKRFKPKSVEEL 157


>SB_41468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = -1

Query: 695 SGIKADGPISCVDIEWIIRFFRKSNFSSPTRQIFKAILFKLVTEDQSSLTDFIAALDHCF 516
           S  + + P +C DI  II F   +NF+    ++  +     V  D      F      CF
Sbjct: 14  SKFRDNRPYTCRDITQIITFELPANFTELPAELPASFTMLCVVVDMCLCAYFRIIDARCF 73

Query: 515 *RWHVCSGLTIGVLACW 465
             + + SGLT  V A W
Sbjct: 74  SAFLLVSGLTAVVTAKW 90


>SB_32564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 265 WTFRDRNAQLKLGDKIYFWTYVI-KDGLGYRQDNGE 369
           W   D NA  K+GD+ + +  V+ K GLG R DNGE
Sbjct: 31  WRLCDMNA--KVGDQNWDYERVMGKHGLGVRNDNGE 64


>SB_52116| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 624 RFPEEPDYPFNVYTTDGTIGFDSGSLIISPVLLESKFSEDKIYQD 758
           R    PDY F  Y  + T   ++ + ++SP     +  ++ IYQD
Sbjct: 542 RITRLPDYYFPQYLNELTCDMETSASVVSPFCAFGRCFQNSIYQD 586


>SB_43623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -1

Query: 509 WHVCSGLTIGVLACWGICSGPVVDVAT----GGLATSTG 405
           W+V +  T GV  CWG C    + ++     GGL  S+G
Sbjct: 312 WYVGAKTTSGVPQCWGYCQASSMKISLLSDYGGLKRSSG 350


>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
          Length = 678

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/70 (31%), Positives = 30/70 (42%)
 Frame = +3

Query: 411 RRSQPTCGHIYHGSTADTPTSQHSYR*TGTDVPTSETVVQGRDKICKGTLIFSDEFEKNS 590
           R+S+   G   H    D P SQ       TD+P S+T  + R    K T +     E+ S
Sbjct: 457 RQSRKRSGSGRHRQHNDLPRSQTREERQHTDLPRSQTRKERRKGTGKSTKVDVSLEERGS 516

Query: 591 LKDLTSWGAE 620
             D  SW +E
Sbjct: 517 SSD--SWDSE 524


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 391  NENGNPVDVANPPVATSTTGPLQIP 465
            N  GN      PPV T TT P   P
Sbjct: 6100 NNKGNKTSTTEPPVTTPTTAPTTTP 6124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,041,453
Number of Sequences: 59808
Number of extensions: 578018
Number of successful extensions: 1384
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)