Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20086
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)                   42   3e-04
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    40   0.002
SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)               33   0.21 
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)                       33   0.21 
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         30   1.5  
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      30   1.5  
SB_46611| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_32151| Best HMM Match : MFMR (HMM E-Value=0.92)                     29   3.5  

>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
          Length = 349

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/56 (35%), Positives = 35/56 (62%)
 Frame = +1

Query: 334 RMGPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVRRNPEQPLPEM 501
           ++ PLE      ++  +++D + +A  + KS+S L+EVSED  KVRR   +P+ E+
Sbjct: 15  KLSPLEQKI-VKQIESMSDDVNFLAKTMKKSSSDLIEVSEDLTKVRRTKSKPVEEL 69



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 14/46 (30%), Positives = 31/46 (67%)
 Frame = +3

Query: 513 RKEICNRSIYAKGFAKDASLDDLLNYFKQFQEVENVIMRRYVRNPQ 650
           R++   +++Y KGF K+A+LD+L  YF+   ++  ++MR+ + + +
Sbjct: 74  RQKAKAKTVYVKGFPKEATLDELQEYFEGKGKIVFIMMRKTLESKE 119


>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/29 (51%), Positives = 24/29 (82%)
 Frame = +2

Query: 257 RQVEYYFGDVNLHRDKFLQEQIKLDDGWV 343
           RQ+EYYF + NLH+D FL++Q+  D+G++
Sbjct: 127 RQIEYYFSEANLHKDFFLRKQMD-DEGYI 154


>SB_12468| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-30)
          Length = 824

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 117 LKSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDE 233
           L+   + H R IK T    +  E+NG E NA  E+SEDE
Sbjct: 565 LEKSPLMHDRPIKDTGMCNLAEESNGSESNATQEDSEDE 603


>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 420

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 528 NRSIYAKGFAKDASLDDLLNYFKQFQEVENV-IMRRYV 638
           +RS++  G A     + L +YF+QF EVE+V IMR ++
Sbjct: 79  SRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIMRTFL 116


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 144 RKIKMTEDKEVTVETNGQEENAKTENSEDE 233
           +K K+T+DK+V  E    EE  K E+  D+
Sbjct: 739 KKKKLTQDKDVETENKNNEEKEKLEDDADQ 768


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +2

Query: 260 QVEYYFGDVNLHRDKFLQEQIK-LDDGWV 343
           Q+++YF D  L +D+FL++QI+   DG+V
Sbjct: 32  QIDFYFSDSALLKDRFLKQQIENHPDGYV 60


>SB_46611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +1

Query: 292 TSR*ISARTNKIR*RMGPLEILTKFNRLAKLTEDTDVIANALNKSTSGLLEVSEDNKKVR 471
           TSR +S+  + +  R G     T+ N+   +TE+T VI     K    +L  S++ ++VR
Sbjct: 184 TSRDLSSALSHVSSRSGVTRKSTQKNKKEIMTEETRVILPMSAKKYRPILTASKEKRRVR 243


>SB_32151| Best HMM Match : MFMR (HMM E-Value=0.92)
          Length = 243

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 120 KSEGIFH*RKIKMTEDKEVTVETNGQEENAKTENSEDET 236
           K +  F+   +  +ED   + ETN  EE++    S+DE+
Sbjct: 186 KKKSTFYSESVLFSEDSSDSDETNSDEESSSASESKDES 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,053,983
Number of Sequences: 59808
Number of extensions: 366773
Number of successful extensions: 1649
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1614
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)