Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20084
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.48 

>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2142

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 252 SVTLYGVNLEMAKARFFLNGTALHGDDLIIHEYIISAPSNNRKSKTILLNGWPLYY--ES 425
           S+T+  +NL             L G  L + +Y+++    +  S  + LNG  L    + 
Sbjct: 217 SITVMAINLNTHDTVILRLTVELSG--LPVDQYLLTPGDKDITSGNVKLNGEVLEMIDDV 274

Query: 426 NLHNLRPNIHRYGRYVSLPPYSIGFWVI 509
              NL+P     G  ++LPP + GFWV+
Sbjct: 275 TFPNLKPLSIPTGE-ITLPPLTFGFWVV 301


>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +1

Query: 76   IGGYYSLVDENLKPLPDWWISVLYKKLVGNKVLQVQ-CNCSRFQRLYIHCTNR 231
            I G  ++V EN+   P W+ ++++  LV N V + Q    S+F+++ +H   R
Sbjct: 1075 IRGSENVVGENVHGYPFWFCTIVFTILVCNAVFRKQWVEASKFKQVTVHIKKR 1127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,013,873
Number of Sequences: 59808
Number of extensions: 436187
Number of successful extensions: 782
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)