Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20015
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30961| Best HMM Match : I-set (HMM E-Value=0)                       30   1.3  
SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.3  
SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)            30   1.3  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            29   2.3  
SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)                       29   2.3  
SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)                      29   2.3  
SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                29   4.1  
SB_28382| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)            28   7.1  
SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)                    27   9.4  

>SB_30961| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1018

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 10  IALNSSLYIIKYY*YTKQFNKLGRDYN*ISIDNIGVNIFQK*YVCNV 150
           I LNS   IIK+  YTK+ +  GR+    S+ N+ VN     Y C V
Sbjct: 89  IKLNSGGGIIKFAPYTKRVSLKGRENLTFSLYNVTVNDEADQYCCEV 135


>SB_21765| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 460

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 360 VWMDLEMTGLDIENDHIMEIAC 425
           V  D E TGLD  ND I+++AC
Sbjct: 157 VMFDTETTGLDTSNDDIIQLAC 178


>SB_15216| Best HMM Match : Exonuc_X-T (HMM E-Value=1.9e-09)
          Length = 415

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 360 VWMDLEMTGLDIENDHIMEIAC 425
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDDIIQLAC 133


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 360 VWMDLEMTGLDIENDHIMEIAC 425
           V  D E TGLD  ND I+++AC
Sbjct: 112 VMFDTETTGLDTSNDVIIQLAC 133


>SB_49723| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 360 VWMDLEMTGLDIENDHIMEIAC 425
           V  D E TGLD  ND I+++AC
Sbjct: 20  VMFDTETTGLDTSNDVIIQLAC 41


>SB_8215| Best HMM Match : FeoB_N (HMM E-Value=4)
          Length = 231

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 573 VSDLRQASVNPVSPCWTLHQLLFCLKSLQVD--L*LYRDLSPLHLAVHLSQ 427
           + ++ Q S+NP+ P   L  L FCL  LQ++  L L      L +A H  Q
Sbjct: 43  LEEVIQPSLNPILPLRLLMLLAFCLSGLQMESILSLSDTFEELSIAKHSEQ 93


>SB_5740| Best HMM Match : CDC14 (HMM E-Value=1.1)
          Length = 1156

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 606 FRIILSASANDVSDLRQASVNPVSPC 529
           FR I SAS  ++S L  AS+ P+ PC
Sbjct: 13  FRAIRSASVTELSKLDNASLRPLLPC 38


>SB_53873| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 660

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 478 ITISGPVATTFSCASVTRHAISIMWS 401
           +T++   A TF+C+S T    +IMWS
Sbjct: 192 LTVNENAAATFTCSSTTPGKATIMWS 217


>SB_28382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -1

Query: 333 YFFSSL--FSETWTNYELRTLLPS 268
           Y  +SL  F ETWTN ELR+  PS
Sbjct: 91  YLVTSLVYFMETWTNIELRSAPPS 114


>SB_33731| Best HMM Match : Exonuc_X-T (HMM E-Value=6.2e-06)
          Length = 275

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +3

Query: 366 MDLEMTGLDIENDHIMEIACL 428
           +D+E TGL   ND I++IAC+
Sbjct: 30  LDVETTGLSKLNDRIVQIACV 50


>SB_4188| Best HMM Match : 7tm_1 (HMM E-Value=9e-06)
          Length = 522

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 594 LSASANDVSDLRQASVNPVSPCWTLHQLLFCLKSLQV 484
           L  +A  V +LR+ASVNP+   W L       K++ V
Sbjct: 171 LQIAAPGVLNLRRASVNPIIYAWRLEHYRKSFKAMLV 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,277,120
Number of Sequences: 59808
Number of extensions: 361810
Number of successful extensions: 907
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)