Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20014
(597 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 93 2e-19
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 5.0
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 5.0
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.0
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 6.6
SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = +1
Query: 28 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 207
MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 208 SKKELAAVRTVCSHVET*LK 267
S+KELA V+T+ +H+E +K
Sbjct: 617 SRKELACVKTIITHIENMIK 636
Score = 84.2 bits (199), Expect = 7e-17
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +3
Query: 255 NMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 410
NMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV+M P
Sbjct: 633 NMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = +1
Query: 508 TTTVKNKDIRKFLDGLYVSEKTTVV 582
+T VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 7 STKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 189 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 97
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 242 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 99
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 10 VKQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 123
++ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 98 LQNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 58 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 192
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 180 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 70
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 42 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 149
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 85 VKSRLVTVKGPRGVLKRNFKHL 150
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_54813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/80 (26%), Positives = 33/80 (41%)
Frame = -3
Query: 403 IFTLLMYFSPKKLRISIIELPSVVTQLMGK*AYTARILYWKPLVTPLIMFLHVNRLSSRR 224
IF+ + ++P+K + +I+ LP + + A L WKP L L + S
Sbjct: 18 IFSRVSGYTPRKRKTAILALPFLARPKWRPFGFVAFPLRWKPTERLLRRLLGLAARDSNN 77
Query: 223 QAPFWIRTISQPSGDEGLPC 164
+ I P GD PC
Sbjct: 78 TSVLPI----APGGDTADPC 93
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,342,536
Number of Sequences: 59808
Number of extensions: 401149
Number of successful extensions: 1024
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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