Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20013
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          158   4e-39
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              89   3e-18
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                58   5e-09
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 58   7e-09
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     39   0.005
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               34   0.13 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              31   0.72 
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.72 
SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              31   0.95 
SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)                 30   1.7  
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              30   2.2  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     28   6.7  
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                28   8.8  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   8.8  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  158 bits (384), Expect = 4e-39
 Identities = 71/82 (86%), Positives = 76/82 (92%)
 Frame = +3

Query: 264 WYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQADLAV 443
           WYLSWALDTNQEERDKG TVEVGRA F+T+ KHFT+LDAPGHKSFVPNMI GA QADL V
Sbjct: 191 WYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGV 250

Query: 444 LVISARKGEFETGFDRGGQTRD 509
           LVISARKGEFETGF+RGGQTR+
Sbjct: 251 LVISARKGEFETGFERGGQTRE 272



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = +2

Query: 509 HAMLAKTAGVKHLVALVNKMDDPTVNWDEKRYNECREKILPYLKNWVSIQRKT 667
           HAMLAKTAGVKHLV LVNKMDDPTV W+E+RY E + K+ P+LK  V    KT
Sbjct: 273 HAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKK-VGFNPKT 324



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = +1

Query: 193 LTGMVDKRTLEKYEREAREKSENHGTYHGHWTQIKKNETKAK 318
           LTG VDKRTLEKYEREA+EK  N  T++  W      E + K
Sbjct: 167 LTGQVDKRTLEKYEREAKEK--NRETWYLSWALDTNQEERDK 206


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 38/63 (60%), Positives = 50/63 (79%)
 Frame = +3

Query: 321 VEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFETGFDRGGQ 500
           ++VG   F+T+ K  T++DAPGHK F+PNMI GAAQAD+A+LV+ A  GEFE GF+ GGQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 501 TRD 509
           TR+
Sbjct: 61  TRE 63


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 24/45 (53%), Positives = 35/45 (77%)
 Frame = +1

Query: 115 KKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREARE 249
           +K H+N+V IGHVD+GKST  G ++   G +DKRT+EK+E+E+ E
Sbjct: 4   EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSE 48


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 23/52 (44%), Positives = 36/52 (69%)
 Frame = +3

Query: 273 SWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQ 428
           +W LD  + ER++G T+++    FET K + T++DAPGH+ F+ NMI G +Q
Sbjct: 9   AWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +3

Query: 285 DTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARK 464
           D  + ER +G +V      F    K   ILD PGHK F  +        D  ++VI   K
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 465 G 467
           G
Sbjct: 115 G 115


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 297 EERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISA 458
           E    G T  +G    +   +    LD PGH++F      GA   DL ++V++A
Sbjct: 118 EGESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 342 FETEKKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKG 467
           F+ +     I+D PGH+SF      G++  D+A+LV+    G
Sbjct: 673 FDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVVDIMHG 714


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 130  NVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEK 228
            N   + HVD GKST+  +++ +TG + K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_58692| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 37

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 82  KKPPRVEDTRSKKEHVNVVFIGHV 153
           KK   VE+  +  EHVN++FIGHV
Sbjct: 13  KKRVEVEEEGNGLEHVNIIFIGHV 36


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 366 TILDAPGHKSFVPNMIGGAAQADLAVLVISARKG 467
           T +D PGH +F      GA   D+ VLV++A  G
Sbjct: 79  TFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 13/89 (14%)
 Frame = +3

Query: 279 ALDTNQEERDKGKTVEVGRAYFETE---------KKH----FTILDAPGHKSFVPNMIGG 419
           + D N + +++G T+++G + F+            +H     T++D PGH S +  +IGG
Sbjct: 63  SFDKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122

Query: 420 AAQADLAVLVISARKGEFETGFDRGGQTR 506
           A         I    G  E GF + G+ +
Sbjct: 123 AQ--------IIGECGTIEGGFGQSGKVK 143


>SB_50187| Best HMM Match : SAM_1 (HMM E-Value=3.1e-21)
          Length = 239

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/89 (26%), Positives = 41/89 (46%)
 Frame = +1

Query: 10  EELDTQVGNTNPNEDGELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIM 189
           EE+   +GN    E  EL  K   + P  +  TR+  + + V  +GH+   K  + G + 
Sbjct: 148 EEVCRWLGNQGLGEYCELFTKHDIRGPELLSLTRNDLKDLGVTKVGHI---KRILSG-VK 203

Query: 190 SLTGMVDKRTLEKYEREAREKSENHGTYH 276
            L G +  ++  K ER AR + +   T +
Sbjct: 204 QLCGGLSPKSAAKIERTARCEEKTSKTQY 232


>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 202 MVDKRTLEKYEREAREKSENHGTYHGHWTQIKKNETKAK 318
           M  K  LE  E +   + EN     G W Q+  N+TK++
Sbjct: 355 MTSKELLEVMEHKTVLREENSAEAQGDWVQVPLNKTKSE 393


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 372 LDAPGHKSFVPNMIGGAAQADLAVLVISARK 464
           +D PGH   +  M+ GAA  D A+L+I+  +
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNE 99


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 1    RHEEELDTQVG-NTNPNEDGELTKKIPKKKPPRVEDTRSKKE 123
            + + E D +V  + +  ED E  KK PKKK   +  T  KKE
Sbjct: 1346 KEKSESDDKVKPHVDGGEDDETRKKSPKKKRKTLNGTDEKKE 1387


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 205 VDKRTLEKYEREAREKSENHGTYHGHWTQIKKNETKAKQ 321
           ++ +  E+ ++E +E  E H T +  W Q KK E + ++
Sbjct: 817 INIQKFEQQQKELKELLEKHKTENEDWIQTKKEELEEER 855


>SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 34  NTNPNEDGELTKKIPKK-KPPRVEDTRSKKE 123
           N + ++DG +  KIPKK     +ED  SKK+
Sbjct: 436 NADASKDGSILLKIPKKFSEDLIEDVESKKK 466


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 499  CPPLSKPVSNSPLRAEMTNTARSA*AAPPIMFGTK 395
            CPP +    +SP+ A + + A  A AA P+M   K
Sbjct: 1671 CPPEAFTPDSSPVPANLLSNAAKASAADPMMINIK 1705


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 94  RVEDTRSKKEHV-NVVFIGHVDAGKSTIGGQIMSLTGMV 207
           ++     KK ++ N+  I HVD GKST+   ++S  G++
Sbjct: 7   QIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,335,220
Number of Sequences: 59808
Number of extensions: 416738
Number of successful extensions: 1636
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)