SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00024
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)             143   1e-34
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)             143   1e-34
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)                  143   1e-34
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)                  143   1e-34
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)            129   1e-30
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)             74   7e-14
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)             51   7e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)                     45   4e-05
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)              38   0.006
SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)                   37   0.010
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)             36   0.030
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)                32   0.28 
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)             32   0.37 
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.48 
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)                31   0.64 
SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)                    29   1.9  
SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)              29   3.4  
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)                28   4.5  
SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)                 28   5.9  
SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 28   5.9  
SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)                 28   5.9  
SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)                 27   7.9  
SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)                 27   7.9  
SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)                 27   7.9  
SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)                 27   7.9  
SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)                 27   7.9  
SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)                     27   7.9  
SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)                 27   7.9  
SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)               27   7.9  
SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)               27   7.9  
SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)                   27   7.9  
SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)                   27   7.9  
SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score = 88.6 bits (210), Expect = 3e-18
 Identities = 41/70 (58%), Positives = 48/70 (68%)
 Frame = +2

Query: 245 QEEDYSTPXXXXXXXXXXXLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHY 424
           ++++Y+TP           LAVL++YKVDENGKI RLRREC  E CGAGVFMA   DR Y
Sbjct: 81  KKKNYTTPKKIKHKKKKVKLAVLKYYKVDENGKITRLRRECPSESCGAGVFMASHFDRQY 140

Query: 425 CGKCHSTMVF 454
           CGKC  T VF
Sbjct: 141 CGKCCLTYVF 150


>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 441 IQKESTLHLV 450



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 517 IQKESTLHLV 526


>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
          Length = 381

 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 137 IQKESTLHLV 146



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 213 IQKESTLHLV 222



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 289 IQKESTLHLV 298



 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 365 IQKESTLHLV 374


>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
          Length = 147

 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/70 (98%), Positives = 70/70 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 186 IQKESTLHLV 215
           IQKESTLHLV
Sbjct: 61  IQKESTLHLV 70



 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 40/69 (57%), Positives = 53/69 (76%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQI VK    KT TL+VE SDT+E+VK KIQ++EGIPP  QRL++  ++L D R+L+DYN
Sbjct: 77  MQISVKA-HWKTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYN 135

Query: 186 IQKESTLHL 212
           I++ S LHL
Sbjct: 136 IKQGSILHL 144


>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
          Length = 142

 Score =  129 bits (312), Expect = 1e-30
 Identities = 62/63 (98%), Positives = 63/63 (100%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDYN
Sbjct: 79  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 138

Query: 186 IQK 194
           IQK
Sbjct: 139 IQK 141


>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
          Length = 150

 Score = 74.1 bits (174), Expect = 7e-14
 Identities = 34/35 (97%), Positives = 35/35 (100%)
 Frame = +3

Query: 111 IPPNQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 215
           IPP+QQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 2   IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 36


>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
          Length = 333

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +3

Query: 12  IFVKTLTGKTITLEVE-PSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNI 188
           I V TLTG+ I +  + P  TI  VK  I+ K G P +QQRL+F G+ L D  T     I
Sbjct: 73  IAVLTLTGERILIPFKSPKHTIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGI 132

Query: 189 QKESTLHLV 215
              +TLHL+
Sbjct: 133 FAGATLHLI 141


>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 1023

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQ---DKEGIPPNQQRLIFAGKQLEDGRTLS 176
           M I  KTL  +T  +E+   +T+  +K KI+    K+  P    +LI+AGK L D   L 
Sbjct: 67  MIITFKTLQQQTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLK 126

Query: 177 DYNIQKES 200
           +YNI ++S
Sbjct: 127 EYNIDEKS 134


>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
          Length = 348

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDY 182
           M++ V    G   TL+V     +EN +A ++ + G+P ++  L   G QL D  +TL+ Y
Sbjct: 1   MKVTVTGEDGSIFTLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAY 60

Query: 183 NIQKESTLHLV 215
           ++++   + +V
Sbjct: 61  SVKENDVILMV 71


>SB_49791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 35

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKE 107
           M ++++TLTG    L V P +TI +VKAKIQ  E
Sbjct: 1   MDLYIQTLTGTAFELRVSPFETIMSVKAKIQRLE 34


>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
          Length = 744

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 9   QIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           Q+F    T    TL    +D  +  +K++I+ K GIP + QRL F  K+L D  TL+  N
Sbjct: 7   QVFAALPTEDVCTLRDLTTDMHVFQLKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVN 66

Query: 186 IQK 194
           +++
Sbjct: 67  LKQ 69


>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
          Length = 198

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 23/60 (38%), Positives = 32/60 (53%)
 Frame = +3

Query: 6   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 185
           MQ+ VKTL  +T T  V               +EGIP  +QRLIF GK L+D + L +++
Sbjct: 1   MQVTVKTLDSETRTFTVS--------------EEGIPAERQRLIFKGKVLQDEKKLKEFD 46


>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 33.9 bits (74), Expect = 0.091
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 30  TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 194
           +G    L++  + TIE ++ ++ DK G PP  QR I   K  +   +L    +++
Sbjct: 44  SGGAFNLQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRE 98


>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
          Length = 796

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 108 GIPPNQQRLIFAGKQLEDGRTLSDYN 185
           GIP  +QRLIF GK L+D + L +++
Sbjct: 1   GIPAERQRLIFKGKVLQDEKKLKEFD 26


>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
          Length = 411

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 15  FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQK 194
           FV    G+ ITL   P  +   ++     + G P     ++   K LED  T++D + Q 
Sbjct: 169 FVVMPEGQVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQP 228

Query: 195 ESTLHL 212
            +TL +
Sbjct: 229 GATLQI 234


>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 69  TIENVKAKIQDKEGIPPNQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 212
           T+ ++K  + +K G+  +  RL+   GK++ D   L DYNI    T+ L
Sbjct: 86  TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134


>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
          Length = 792

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = +3

Query: 12  IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYNIQ 191
           + ++T  G T+ +E+    ++E++KA+ + + GIP    RL      LED   + +    
Sbjct: 185 MLLQTRGGSTLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHL 244

Query: 192 KEST 203
           +++T
Sbjct: 245 QKAT 248


>SB_5154| Best HMM Match : zf-C2H2 (HMM E-Value=1.8)
          Length = 180

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 59  AVRYHRECES*NSRQRGNPSQSTEVDLCWKAAGRWTYPLGLQY 187
           +  Y +E E  + RQR    +S E D+C K   R+T      Y
Sbjct: 39  STEYTQESEGLDERQRARGKKSFECDICGKCFSRFTITTKYNY 81


>SB_31564| Best HMM Match : ubiquitin (HMM E-Value=0.0026)
          Length = 309

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = +3

Query: 18  VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGR---TLSDYNI 188
           V  + G+T  +   P  +I  +K KI     +   +QRL++   +L++ +    LS++ +
Sbjct: 60  VAMMGGETTVIPYNPVMSIAELKLKISQNIRVDRLKQRLMYNDTELKENKGSGKLSEFGV 119

Query: 189 QKESTLHLV 215
              +T+ L+
Sbjct: 120 PPYATISLI 128


>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
          Length = 635

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 332 ENGKIHRLRRECTGEQC 382
           + G+IH L++EC G QC
Sbjct: 106 DGGEIHNLQQECIGSQC 122


>SB_36411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 654

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 427 AVVTVLHHRHEHSGA 383
           A++TV+HHRH H  A
Sbjct: 525 AIITVIHHRHHHHPA 539


>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
          Length = 1105

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +2

Query: 101 QRGNPSQSTEVDLCWKAAGRWTYPLGLQYPEGIHPPPGVEAS 226
           QRG  S+ T +   W+ +G +   L       IHPP  V  S
Sbjct: 299 QRGVSSRKTMISKAWQVSGVYHITLDANVTPVIHPPRRVAIS 340


>SB_15135| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 794

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 421
           YK D  GK+  L+R C  ++C    ++ V  D +
Sbjct: 364 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 397


>SB_28983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 442
           YK D  GK+  L+R C  ++C         + +  C +C S
Sbjct: 515 YKCDNCGKVGHLKRVCQSKECKKXXXXQGGKPKTACHRCGS 555



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 568 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 599


>SB_28642| Best HMM Match : RVT_1 (HMM E-Value=8.4e-39)
          Length = 1750

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRH 421
           YK D  GK+  L+R C  ++C    ++ V  D +
Sbjct: 207 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVDNN 240


>SB_50156| Best HMM Match : RVT_1 (HMM E-Value=7.2e-37)
          Length = 493

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 63  YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 94


>SB_48126| Best HMM Match : RVT_1 (HMM E-Value=5.5e-39)
          Length = 1510

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260


>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
          Length = 481

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/44 (31%), Positives = 28/44 (63%)
 Frame = +3

Query: 27  LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE 158
           L G +IT+ +E  D +EN++    +K+ +PP  ++L+F  + L+
Sbjct: 102 LGGNSITV-IEGLDKLENLRELHMEKQHLPPG-EKLLFDPRTLQ 143


>SB_39101| Best HMM Match : RVT_1 (HMM E-Value=2.4e-38)
          Length = 856

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 372 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 403


>SB_25140| Best HMM Match : RVT_1 (HMM E-Value=7.8e-38)
          Length = 1425

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 898 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 929


>SB_46071| Best HMM Match : RVP (HMM E-Value=3e-05)
          Length = 403

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260


>SB_45108| Best HMM Match : RVT_1 (HMM E-Value=4.9e-37)
          Length = 1122

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 245 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 276


>SB_23675| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
          Length = 342

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 202 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 233


>SB_19158| Best HMM Match : zf-CCHC (HMM E-Value=0.00067)
          Length = 369

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 229 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 260


>SB_15324| Best HMM Match : RVP (HMM E-Value=8.1e-05)
          Length = 415

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 66  YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 97


>SB_10983| Best HMM Match : RVP (HMM E-Value=3.8e-05)
          Length = 717

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 268 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 299


>SB_2074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 YKVDENGKIHRLRRECTGEQCGAGVFMAVMED 415
           YK D  GK+  L+R C  ++C    ++ V  D
Sbjct: 428 YKCDNCGKVGHLKRVCQSKECKETKYVEVSVD 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,183
Number of Sequences: 59808
Number of extensions: 367114
Number of successful extensions: 940
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -