Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00013
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)                      29   4.1  
SB_46764| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_54208| Best HMM Match : fn3 (HMM E-Value=0)                         28   7.2  
SB_3790| Best HMM Match : fn3 (HMM E-Value=6e-17)                      28   7.2  
SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)                     28   9.5  

>SB_19852| Best HMM Match : SOUL (HMM E-Value=2.7)
          Length = 420

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +2

Query: 191 LMKVTTEVC*NNYRLKSLLTNIVNKL*NH 277
           + K T  +  N  R+++++ NI+NK+ NH
Sbjct: 14  IKKTTNAITINQTRIRTIIVNIINKIINH 42


>SB_46764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 292

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 686 HMPESRLRHVQGKLSYIQVPNNNI-RTVGLP 597
           H P SR R   G L+Y   P  N+ R VG+P
Sbjct: 122 HTPSSRERMSSGMLAYPYKPRKNVERNVGIP 152



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 686 HMPESRLRHVQGKLSYIQVPNNNI-RTVGLP 597
           H P SR R   G L+Y   P  N+ R VG+P
Sbjct: 36  HTPTSRGRMSSGMLAYPYKPRKNVERNVGIP 66



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 686 HMPESRLRHVQGKLSYIQVPNNNI-RTVGLP 597
           H P SR R   G L+Y   P  N+ R VG+P
Sbjct: 79  HTPTSRGRMSSGMLAYPYKPRKNVERNVGIP 109



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 686 HMPESRLRHVQGKLSYIQVPNNNI-RTVGLP 597
           H P SR R   G L+Y   P  N+ R VG+P
Sbjct: 165 HTPTSRGRMSSGMLAYPYKPRKNVERNVGIP 195


>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1292

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 590 YYSVDRRSECCCSELVYTKAYLE--HVVSEIRAYVKYLVCYDGY 715
           +Y VD  S     E VYT AY E  + V+ +R Y  YLV   GY
Sbjct: 444 WYEVDN-STGEAIERVYTAAYNELFYTVNGLRPYTLYLVSVAGY 486


>SB_3790| Best HMM Match : fn3 (HMM E-Value=6e-17)
          Length = 100

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 590 YYSVDRRSECCCSELVYTKAYLE--HVVSEIRAYVKYLVCYDGY 715
           +Y VD  S     E VYT AY E  + V+ +R Y  YLV   GY
Sbjct: 39  WYEVDN-STGEAIERVYTAAYNELFYTVNGLRPYTLYLVSVAGY 81


>SB_20867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 688 DICPNLAYDMFKVSFRIY 635
           DICPN  YD+++  F +Y
Sbjct: 292 DICPNQVYDIYRPFFYVY 309


>SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)
          Length = 638

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 686 HMPESRLRHVQGKLSYIQVPNNNI-RTVGLP 597
           H P SR R   G L+Y   P  N+ R VG+P
Sbjct: 406 HTPTSRGRMSSGMLAYPYKPRKNVERNVGIP 436


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,304,872
Number of Sequences: 59808
Number of extensions: 453584
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)