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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00006
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   5e-34
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       36   0.022
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.12 
SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.15 
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             32   0.47 
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)                 32   0.47 
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_17583| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_22106| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.6  

>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score =  141 bits (341), Expect = 5e-34
 Identities = 67/85 (78%), Positives = 76/85 (89%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           EELKKSLYAIFSQFG ILDIVA+KTLKMRGQAFV+F++I SAT ALRSMQGFPFYDKPMR
Sbjct: 21  EELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMR 80

Query: 181 IQYSKIDSDIIAKSKGTFQERPKRP 255
           IQY+K  SD +AK++GTF  R K+P
Sbjct: 81  IQYAKGKSDAVAKAEGTFVPREKKP 105



 Score = 85.8 bits (203), Expect = 3e-17
 Identities = 41/55 (74%), Positives = 46/55 (83%), Gaps = 2/55 (3%)
 Frame = +3

Query: 354 VNAEQP--PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
           +  +QP  PN ILFLTNLP ET+E+MLSMLFNQFPGFKEVRLVP R DI+FVE E
Sbjct: 157 IPTQQPDLPNNILFLTNLPMETTELMLSMLFNQFPGFKEVRLVPGRSDISFVEFE 211



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 20/30 (66%), Positives = 27/30 (90%)
 Frame = +2

Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
           NE+Q+  AK+ALQGF+ITPT+AM I++AKK
Sbjct: 212 NEVQAGTAKDALQGFRITPTNAMSISYAKK 241


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 18/61 (29%), Positives = 31/61 (50%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
           E + K+++  F     +  I   +T + +G  FV FRE  +A  A+  M GF    +P++
Sbjct: 255 EAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQMNGFELAGRPLK 314

Query: 181 I 183
           I
Sbjct: 315 I 315


>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 55  DIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPM 177
           DI  MK  +M+GQAFV       A  ALR + G+  + KP+
Sbjct: 282 DIRLMKEGRMKGQAFVTLPSEEKAKRALREVHGYMLHGKPI 322


>SB_9365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQIL-DIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPM 177
           E+LK  +  +FS+FGQI+ +   M+    RG  F+ F   S A  A+++  G+   DK  
Sbjct: 88  EKLKNVIRKVFSKFGQIVTEHYPMEKDLTRGYIFLEFSNASDAVRAVKTANGYKL-DKHH 146

Query: 178 RIQYSKI-DSDIIAKSKGTFQERPKRP 255
               +   D + +   K  +QE  K+P
Sbjct: 147 IFAVNHFEDFNKLLSLKEEWQEPTKQP 173


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +1

Query: 31  FSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDS 204
           F ++G++  +V  +   +  QA V F  + SAT+A   M+G   + + +R+++   +S
Sbjct: 348 FGRYGRVTKVVINR---VTNQALVSFDSVDSATIAHAQMKGRTMFSRRVRVEFVSRES 402



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 31  FSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSM 147
           F ++G+++D+   K       AFV F E+SSA  A R M
Sbjct: 269 FERYGEVIDVDIKKQPGNNPYAFVQFAELSSAIQARRKM 307


>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
          Length = 97

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 13  KSLYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
           + + + F Q+G I D+  +K   T + RG  +V F + SSA +A   M G    D P  I
Sbjct: 37  EDIRSAFEQYGTIEDVWVVKDKATKENRGVCYVKFVKASSAALACEEMDGRNIGDDPKPI 96

Query: 184 Q 186
           +
Sbjct: 97  K 97


>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 384 LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR 485
           LF++NLP +  E  +  LF++    K+VRLV NR
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNR 206


>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 279

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 23/84 (27%), Positives = 39/84 (46%)
 Frame = +1

Query: 19  LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKI 198
           L+  F Q G    +  +   +M+GQAFV F +   A  A   + G+    +P+ I++ + 
Sbjct: 133 LFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLVNGYRLKGRPVIIEFGRK 192

Query: 199 DSDIIAKSKGTFQERPKRPSYLKV 270
                A+ + +    P  PS LKV
Sbjct: 193 REK--AQQRDSEAGAPLDPSLLKV 214


>SB_17583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 348 NNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELEMKCNL 527
           NN+    PP    F  N    TS   LS++ N FP   ++R + NR+ I      M    
Sbjct: 122 NNIIWYNPP----FSKNTSTNTSHRFLSLIDNNFPKDHKLRKIFNRNTIKISYSCMSNTK 177

Query: 528 QQLKKHYK 551
           Q +  H K
Sbjct: 178 QIIDSHNK 185


>SB_22106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 645 LNLFILKITCFTLHYFLAKVIFIACVGVILNPCNASLAAADCISFP 508
           L L  LK    T   F++ +  IA V V LN C+ SL     I FP
Sbjct: 89  LMLDTLKYDSVTACEFVSSINLIAIVAVSLNLCSVSLERFLVIQFP 134


>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFP---FYDK 171
           + +K+S++  F +FG I   V +        A + FR +  A    R+++       +D+
Sbjct: 102 QPMKESIFHEFKKFGDIS--VHLFGRGNDRYAVLYFRSLDDAKETKRALERRSRTILFDR 159

Query: 172 PMRIQYSKIDSDIIAKSKGTFQERPKRP 255
           P+RI+Y+         S G +  R   P
Sbjct: 160 PLRIEYNLYPERTSNHSPGDYYHRSASP 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,783
Number of Sequences: 59808
Number of extensions: 381341
Number of successful extensions: 823
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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