Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00003
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   2e-27
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)         68   7e-12
SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)                      30   1.4  
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       30   1.4  
SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)              29   2.4  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   7.2  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score =  119 bits (286), Expect = 2e-27
 Identities = 59/84 (70%), Positives = 66/84 (78%)
 Frame = +1

Query: 256 VHFRRPKTFXPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTS 435
           V F RPKT    R+PKYPR S P+ N++D Y IIK PLT+E+AMKKIEDNNTLVFIV   
Sbjct: 162 VKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKHPLTTESAMKKIEDNNTLVFIVDVR 221

Query: 436 ANKHHIKAAVKKLYDINVAKVNTL 507
           ANK  IKAAVKKLYDI V+KVNTL
Sbjct: 222 ANKPQIKAAVKKLYDIVVSKVNTL 245


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 34/41 (82%), Positives = 35/41 (85%)
 Frame = +1

Query: 385 MKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTL 507
           MKKIEDNNTLVFIV   ANK  IKAAVKKLYDI V+KVNTL
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTL 41


>SB_17934| Best HMM Match : PX (HMM E-Value=2e-19)
          Length = 586

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/72 (25%), Positives = 37/72 (51%)
 Frame = +1

Query: 331 NRMDAYNIIKFPLTSEAAMKKIEDNNTLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLT 510
           N +D+Y  +K    +     K ED ++ +F+V+ +    H+   VK++ D+  + V  +T
Sbjct: 341 NAVDSYGKVKLQNIAVWYYPKSEDISSDIFLVNHNRILLHVDVYVKRVEDLAESLVPRVT 400

Query: 511 GLMVRRKRTYDS 546
            +++  K   DS
Sbjct: 401 VIVIDTKLNDDS 412


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = +1

Query: 259 HFRRPKTFXPPRHPKYPRKSLPKRN-RMDAYNIIKF---PLTSEAAMKKI 396
           H   P+ F PP+H   PRK  P +N  +   N+      PL   +A KKI
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKNIALTTENLAPKKIPPLPGNSAPKKI 115


>SB_20380| Best HMM Match : Lipase_GDSL (HMM E-Value=0.24)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 67  CGNSSQNCQTQASSFQIEDCTEAQKDWD*GTKKSSETCY*ST*GSEEGCK 216
           CGN + NC  +A +   E  +    DW       +ETC      SEE C+
Sbjct: 129 CGNGTSNCNCEACTDFSEVISAELYDW----VPQNETCVVKNYSSEEACR 174


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 341 SMRFLLGRDFLGYLGCLGGSNVLGLRKC 258
           SMR++ G  F+G L C  G + L LR C
Sbjct: 636 SMRYINGLHFIGLLLCAVGLSCLVLRTC 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,249,957
Number of Sequences: 59808
Number of extensions: 329490
Number of successful extensions: 930
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)