Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0200.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   2.5  
SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)                 29   3.3  
SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_52269| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 28   7.6  

>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -2

Query: 778  QSVNCSGTSRINSCRCNPKAMR*PEGLNRPRQCQSXAVFTXVDVEQDVIVVLSRLQVP 605
            ++  CS   R N+CR  PKA        R   C     +T      DV V+LSR+ +P
Sbjct: 3448 EATGCSPCRRHNACRSGPKAHTSYSMYGRRGGCSH---WTGGGWRNDVYVILSRVGIP 3502


>SB_17366| Best HMM Match : Filament (HMM E-Value=0.14)
          Length = 306

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/98 (21%), Positives = 46/98 (46%)
 Frame = +3

Query: 75  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAY 254
           S++  +++  +  NS + + +     + +  +E +K E+   ++++          E++ 
Sbjct: 36  SELREEVILLRKENSQIESTFVEKNAELRQHFEIEKEELNRKLIHEKEELRYSLEAEFSQ 95

Query: 255 NFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL 368
            F + +  T SG++ QL  DL   KTR     SA + L
Sbjct: 96  KFVNESA-TQSGVIQQLDGDLRMMKTRCGELESAMLEL 132


>SB_32194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 156 SKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYNFGSRAPRTSSGIVSQLSSDLSSPKTR 335
           S+ L +EKK E ++ +    + N K + + +  NF +  P   S    +L ++ +S  + 
Sbjct: 224 SQRLEKEKKKEWVSCIKKTEVTNRKRSLVSFLRNFATGNPFFPSFFHYELPAEEASGTST 283

Query: 336 LSLCTSATVSL 368
             L T   VSL
Sbjct: 284 GRLITRCQVSL 294


>SB_52269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +2

Query: 548 GTATIWAFGVNSVDSFRAQWYLQPAKYDNDVLFYIYXRE 664
           GT  ++A+   + +SF+AQ+YL  +     V+ +I+ RE
Sbjct: 15  GTTCLFAYQAVAQESFQAQYYLTISVVLQAVVMFIFGRE 53


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +2

Query: 407 PAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTNVTNTWYWESALTGTATIWAFGVNSV 586
           P +  G   T+   +  ++  +E NKV    +NT   +++ WE    G   + +F V++ 
Sbjct: 556 PGHVFGVRATTGIPAGSIMGPYEGNKVKPADVNTTADSSYMWEIFENG---VLSFFVDAS 612

Query: 587 DSFRAQW 607
           D F + W
Sbjct: 613 DEFTSNW 619


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,674,450
Number of Sequences: 59808
Number of extensions: 405111
Number of successful extensions: 1117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)