Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0195.Seq
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_58371| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)                     29   4.4  
SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)                   28   7.6  
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)                    28   7.6  

>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 329 LVGLLNAKNYNFGGEFVDYIVKTFKE-NLKVGKW 427
           L+ L+N +N N  G   +  + TFK+ N+K GKW
Sbjct: 793 LIYLINNENTNRAGPVAEIKLSTFKKRNMKEGKW 826


>SB_58371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 27  SKICDTHSDFIMNRRRGHDDEEGYERLHRKRRRVSENQEIEDRLE 161
           SKI +T         R  + EE Y+RL      V ENQ +E RLE
Sbjct: 68  SKIAETEDQLAETGLRKKEAEESYKRL------VDENQSLESRLE 106


>SB_32850| Best HMM Match : GRP (HMM E-Value=0.089)
          Length = 676

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +3

Query: 27  SKICDTHSDFIMNRRRGHDDEEGYERLHRKRRRVSENQEIEDRLE 161
           SKI +T         R  + EE Y+RL      V ENQ +E RLE
Sbjct: 68  SKIAETEDQLAETGLRKKEAEESYKRL------VDENQSLESRLE 106


>SB_56665| Best HMM Match : rve (HMM E-Value=8.6e-16)
          Length = 608

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 686 RRFIARNLL*SQVSDLIEXPSXXTXPDQPKVMLTAPPNTNQSL 558
           R+ I+     SQV D++E P       QP   +  PPN++Q++
Sbjct: 548 RQLISTGETNSQVPDVLESPEPDDAQQQPS-QVALPPNSSQAI 589


>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 986

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = -2

Query: 232 TLANPSRLLSKLELLFSPTLKIKDSKRSSISWFSDTRRLFRW-RRSYPSSSSCPLRRFII 56
           TLA   +L   L L+FS    I+     +++WF  T    +W +R + S +   LR   I
Sbjct: 63  TLAPIEQLRGSLRLMFSKNPNIRVKGLGAVAWFLMTDASQQWGQRFFKSRTPDTLRDIFI 122

Query: 55  KSLCVS 38
               VS
Sbjct: 123 VDQLVS 128


>SB_304| Best HMM Match : UPF0154 (HMM E-Value=0.32)
          Length = 701

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 356 YNFGGEFVDYIVKTFKENLKVGKWNAARYCLR-FIADLVNCHVLAASSLLTL 508
           +N+G E  +  +K   + LK  K++   +CLR  I  LV    L   S++ L
Sbjct: 163 HNYGAELSEERIKECMKALKTKKFSKLEFCLRQLILALVERQTLPIDSVIDL 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,858,004
Number of Sequences: 59808
Number of extensions: 433030
Number of successful extensions: 1277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)