Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= psV30189.Seq
(763 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 107 7e-24
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 96 2e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 69 6e-12
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.44
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 32 0.44
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.8
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 30 1.8
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_40699| Best HMM Match : HSA (HMM E-Value=3.4) 28 9.5
SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0) 28 9.5
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 107 bits (258), Expect = 7e-24
Identities = 51/95 (53%), Positives = 66/95 (69%), Gaps = 2/95 (2%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHXDFIXXMXTGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+D+ L +F+T +T++DAPGH DFI M TG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 437 TREHALLAFTLGVKQLIVGVNKMD--PLNHHTVSP 535
TREHA+L +LGV QLIV +NK+D L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 189
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/113 (39%), Positives = 67/113 (59%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHXDFIXXMXTGTSQADCAVLIVAAGTGEFEAGISKNGQ 436
+++ F+T + T++DAPGH F+ M +G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 437 TREHALLAFTLGVKQLIVGVNKMDPLNHHTVSPDLRKSXRKYPHTSRRLGYNP 595
TREHA+LA T GVK L++ VNKMD + K +++G+NP
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = +1
Query: 127 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 246
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 68.5 bits (160), Expect = 6e-12
Identities = 30/36 (83%), Positives = 31/36 (86%)
Frame = +2
Query: 257 IDIALWKFETSKYYVTIIDAPGHXDFIXXMXTGTSQ 364
IDIALWKFET KYYVT+IDAPGH DFI M TGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/20 (100%), Positives = 20/20 (100%)
Frame = +1
Query: 187 MGKGSFKYAWVLDKLKAERE 246
MGKGSFKYAWVLDKLKAERE
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.11
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 299 VTIIDAPGHXDFIXXMXTGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 478
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 479 QLIVGVNKMD 508
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 43 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 138
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 293 YYVTIIDAPGHXDFIXXMXTGTSQADCAVLIVAAGTG 403
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 32.3 bits (70), Expect = 0.44
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 308 IDAPGHXDFIXXMXTGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 487
+D PGH + M G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 488 VGVNKMD 508
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 305 IIDAPGHXDFIXXMXTGTSQADCAVLIV 388
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/85 (25%), Positives = 33/85 (38%)
Frame = +2
Query: 263 IALWKFETSKYYVTIIDAPGHXDFIXXMXTGTSQADCAVLIVAAGTGEFEAGISKNGQTR 442
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 443 EHALLAFTLGVKQLIVGVNKMDPLN 517
E A GV +I +NK+D N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 58 THINIVVIGHVDSGKSTTTGHLIY 129
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 67 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 165
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_40699| Best HMM Match : HSA (HMM E-Value=3.4)
Length = 221
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 494 VNKMDPLNHHTVSPDLRKSXRKYPHTSRRLGYNPAAVAFVPISGWHGDNMLEPS 655
VN+ + +S + ++S RKYPH + +AV +S +H +N PS
Sbjct: 160 VNESTTIKGKALSQEYKESCRKYPHRVLIMAKRKSAV----VSNFHKNNGSPPS 209
>SB_17880| Best HMM Match : Tubulin_C (HMM E-Value=0)
Length = 375
Score = 27.9 bits (59), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 262 IDWIPTHAQPLVCPIPKH 209
+DWIP + + VC +P H
Sbjct: 247 VDWIPNNGKVAVCDVPPH 264
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,468,085
Number of Sequences: 59808
Number of extensions: 481594
Number of successful extensions: 1159
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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