Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30183.Seq
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               31   0.71 
SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       30   2.2  
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      29   3.8  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           29   5.0  
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   29   5.0  
SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)             28   6.6  
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)                 28   6.6  
SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 665 NAVVKMFLGPKYDENGFPFSLEDNWMNFYELDWFVQKVNPGQSQITRSSTD 513
           N  V ++  PK  ++  P S+ D WM+ +E   FV+K+N        S TD
Sbjct: 248 NESVLVWRAPKSSQDALPVSITDRWMSQHE---FVEKLNMQAVLCASSHTD 295


>SB_14693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 411 PSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYP 268
           PS ++ P+  Y G+PFQ     YP  P P     F  + P + P  YP
Sbjct: 169 PSPVLSPQ-VYRGYPFQ-----YPGTPPPPMYPAFPPIFPSSPPPEYP 210


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = -1

Query: 252 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 88
           +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK  LT++ 
Sbjct: 69  YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125

Query: 87  YNSRISCEYVKTVAN 43
             S +S  Y+    N
Sbjct: 126 NYSTLSKNYLTLSKN 140



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -1

Query: 240 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 61
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 60  VKTVANVI 37
           +    N +
Sbjct: 56  LTLSKNYL 63


>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
 Frame = -2

Query: 623 NGFPFSLEDNWMNFYELDWFVQKV-----NPGQSQITRSSTDFDSSKKTLYRWP-KSTSS 462
           N     +ED     YE DW+V KV       G++ +T  S    + +   +RWP +    
Sbjct: 598 NELALKVEDFVAAAYEGDWYVGKVQQIDQEDGEALVTFMSRSGTTLQSFSFRWPAREDVI 657

Query: 461 WTKERFLLTCSTP 423
           W K   +L    P
Sbjct: 658 WIKRDMILCVIEP 670


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -1

Query: 252 FLSTSNNLTCSSRRSWSTMKENYSPIYLTFLT-----IHQIKRNYNALIRKSKRTLTITV 88
           +L+ S N    S +  +T+ +NYS +   +LT     ++ + +NY+ L   SK  LT++ 
Sbjct: 69  YLTLSKNYLTLSIKVLNTLSKNYSTLSKNYLTLSIKVLNTLSKNYSTL---SKNYLTLSK 125

Query: 87  YNSRISCEY 61
             S +S  Y
Sbjct: 126 NYSTLSKNY 134



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = -1

Query: 240 SNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIRKSKRTLTITVYNSRISCEY 61
           S N    S +  +T+ +NYS +   +LT   + +NY+ L   SK  LT++   S +S  Y
Sbjct: 2   SKNYLTLSIKVLNTLSKNYSTLSRNYLT---LSKNYSTL---SKNYLTLSKNYSTLSKNY 55

Query: 60  VKTVANVI 37
           +    N +
Sbjct: 56  LTLSKNYL 63


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -1

Query: 264 DRPVFLSTSNNLTCSSRRSWSTMKENYSPIYLTFLTIHQIKRNYNALIR-KSKRTLTITV 88
           D P  L+T+NN TC+ R+  +       PI + +L  H  K+    L   + K T T+  
Sbjct: 24  DAPTSLATANNNTCNCRQK-NACPRKLPPI-ICYLPSHCNKKGQQHLRNLRKKATATMWH 81

Query: 87  YN 82
           YN
Sbjct: 82  YN 83


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 342 PYEPTPKESEPFKSVVPDNKPFGYPFDRPVFLSTSNNLTCSSRRSWSTMKENYSP 178
           P  PTP+ S P +   P +KP  +P   P      +    + R   ST  +N  P
Sbjct: 130 PQHPTPQHSPPIRKQTPPSKP--HPSPTPAQAPPHSRPVAAKRPMPSTPDQNPCP 182


>SB_54824| Best HMM Match : Aconitase (HMM E-Value=0.00029)
          Length = 266

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
 Frame = -2

Query: 629 DENGFPFSLEDNWMNFYELDWFV-QKVNPGQ-SQITRSSTD---FDSSKKTLYRW-PKST 468
           D+NG P +L+D W +  E+D  V   V P Q  QI     D    + ++  LY W P ST
Sbjct: 193 DKNGNPITLKDLWPSDEEIDAIVAASVKPEQFKQIYIPMFDLGTIEEAESPLYDWRPMST 252


>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
          Length = 245

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
 Frame = -1

Query: 453 GKIPTDMFNSSDTMPSRLMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKP-- 280
           G  PT  F      P   +L    Y G+PFQ     YP  P P     F    P + P  
Sbjct: 156 GPQPTQGFRPFPGPPP--VLSPQVYRGYPFQ-----YPGTPPPPMYPAFPPSFPSSPPPE 208

Query: 279 -FGYPFDRPVFLSTSNNLTCSSR 214
             G P   P  +ST  +  C  R
Sbjct: 209 YPGLPVSSPGRVSTRPDCNCGGR 231


>SB_57764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 358 QLEGESIVCTLRQHQPRRHSVRGVEHVSRNLSLVQELVDFGHR*RVFFEESKSVDERV 531
           +LE E  V +L +H P    + GV  +   + ++ EL+D  +   + FEE+   DE V
Sbjct: 304 ELENEVAVHSLVRH-PNIIQIMGVSFIKNLVYIISELIDGKNLDDILFEET-DADESV 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,624,507
Number of Sequences: 59808
Number of extensions: 396584
Number of successful extensions: 978
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)