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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30158.Seq
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58674| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.022
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       30   1.9  

>SB_58674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 36.7 bits (81), Expect = 0.022
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = -1

Query: 699 PWERPGCXLQTNR---RTASGSDWVT-RTKLIPFPSNPWITGLPLAKAGP 562
           PW+ PG    T R   R   G DW T R  +   P   W TG P  + GP
Sbjct: 31  PWDGPGKDWTTGRPSIRDGPGKDWTTGRPSIWDAPGKDWTTGRPSIRDGP 80


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 159 YCSSSNPHILVDFLSKVYSSQLSIVNGPI 245
           YC++SNPH  + FL+KV +  +S+    +
Sbjct: 812 YCNASNPHASMRFLAKVPAPPVSVAGSSV 840


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,633,788
Number of Sequences: 59808
Number of extensions: 360796
Number of successful extensions: 832
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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