Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0021.Seq
         (421 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)             29   1.6  
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_52361| Best HMM Match : EutS (HMM E-Value=1)                        28   3.6  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     28   3.6  
SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  

>SB_37289| Best HMM Match : Herpes_teg_N (HMM E-Value=0.07)
          Length = 1248

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 119  KPILCAERENIQHCIMKKQCVLSLDSLSMSNHR 21
            KP+    +E   H + KK CV S D L +S H+
Sbjct: 905  KPVASKRQETAPHRLKKKPCVESGDVLIISTHK 937


>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1593

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 338  VTKVRPTRRDKKKVCVSAPTHDWSLL 415
            VT+  PT R      V+AP HDWS L
Sbjct: 1024 VTEPIPTTRVGTAPLVAAPAHDWSTL 1049


>SB_52361| Best HMM Match : EutS (HMM E-Value=1)
          Length = 682

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 338 VTKVRPTRRDKKKVCVSAPTHDWSLL 415
           VT+  PT R      V+AP HDWS L
Sbjct: 307 VTEPIPTTRVVTAPLVAAPAHDWSTL 332


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 338 VTKVRPTRRDKKKVCVSAPTHDWSLL 415
           VT+  PT R      V+AP HDWS L
Sbjct: 448 VTEPIPTTRVGTAPLVAAPAHDWSTL 473


>SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +3

Query: 105 T*YRFYCYVKP*YYKYENYQISNFNTKILKL*VITSIDIPYDCH-FFYTALLWLRHA 272
           T Y +Y Y    YY Y  Y I  F  ++  L V T   I   C+ FFY     ++HA
Sbjct: 8   TAYYYYYYYYYYYYYYYYYAILEFRGEVRSLLVYT---IRTSCNKFFYDRAESIKHA 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,630,311
Number of Sequences: 59808
Number of extensions: 189386
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)