Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0015.Seq
         (476 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.069
SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)            29   2.6  
SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_55493| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_47896| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  27   7.9  
SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)                     27   7.9  
SB_41353| Best HMM Match : HLH (HMM E-Value=1.2)                       27   7.9  

>SB_18209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 91  TLTRPRNRNEYTLNILTRNNWXASLXXXXXXXXXXXXYTKIVAVKKLVVAF 243
           T  +   R    ++++ R +W ASL            Y K+VAVKKLVV F
Sbjct: 44  TCQQTTTRVHAAMHLVIRIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 94


>SB_18079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = +1

Query: 142 RNNWXASLXXXXXXXXXXXXYTKIVAVKKLVVAF 243
           R +W ASL            Y K+VAVKKLVV F
Sbjct: 14  RIHWRASLVPAAAVIPAPIAYIKVVAVKKLVVGF 47


>SB_34251| Best HMM Match : FA_hydroxylase (HMM E-Value=5.5)
          Length = 203

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 240 CNYELFNRNNFSIRYWSWNYRGCWH 166
           C   +  RN   +RYW W  R C H
Sbjct: 91  CEVTVIARNILPVRYWIWLSRKCGH 115


>SB_3045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  HSRHGAGSDEK*RYGTLTRPRNRNEYT 126
           HS  G    +  RYGT+T  R R++YT
Sbjct: 492 HSIRGMAQSQYTRYGTVTSTRARSQYT 518


>SB_55493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/69 (27%), Positives = 29/69 (42%)
 Frame = -3

Query: 474 ADILLFHARNIQAAFLARFEHSNLFKVKLSAHLDTHRRAPR*DFDIEPAFFRTPAHRRYL 295
           A + +F +  ++A  L      N     LS      +R        EPAFFR PA  + L
Sbjct: 10  AVLAVFASHQVEAKSLKVDADGNYLSSDLSHGNQGRKRTLDSGGSPEPAFFRVPAFGKEL 69

Query: 294 RKRVSITAD 268
             R ++ +D
Sbjct: 70  HVRAALNSD 78


>SB_47896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 2   NGYHIQGRQQARKLPTPGTGQVVTKNNDTGLLRGL 106
           N Y ++G +Q R+LP P  G +V   ++T  LRG+
Sbjct: 369 NTYKLRGVKQKRQLP-PRFGLLVLSKHNTEKLRGV 402


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 335 NRRFLERRLTDDISANVSVSPRMRCTDARRTNAT 234
           N+R+   RLT   S+ +S    + CT    +N T
Sbjct: 215 NQRYKNLRLTSSTSSEISAEDTLMCTSPELSNKT 248


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 317  RRLTDDIS-ANVSVSPRMRCTDARRTNATTSFLTAT 213
            R+L + ++ ANV   PR+R TD   T+ +T   T+T
Sbjct: 1354 RKLLETVNIANVPTFPRLRRTDTTTTSTSTESDTST 1389


>SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)
          Length = 422

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = -3

Query: 303 RYLRKRVSITADAVHRRAAHKCNYELFNRNNFSIRYWSWNYRGCWHQTC 157
           R  RK    T  A++++  H+ N +    N+   R W +    C  +TC
Sbjct: 253 RNWRKSNMKTISAIYQKVRHRLNDDWAFGNDLDARPWDFQAEECSLRTC 301


>SB_41353| Best HMM Match : HLH (HMM E-Value=1.2)
          Length = 500

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 338 LNRRFLERRLTDDISANVSVSPRMRCTDARRTNATTS 228
           L+R+ +E  L DD+S+ VS SPR +  D +     T+
Sbjct: 167 LDRKIIE--LYDDVSSRVSASPRGKDNDKKYARQDTA 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,725,368
Number of Sequences: 59808
Number of extensions: 287766
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)