Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0060.Seq
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_30396| Best HMM Match : M20_dimer (HMM E-Value=4e-08)               30   2.5  
SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22)             29   5.7  

>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 638 KYFNYFGPTKCATSNRHFTNRLLLQG 561
           KY N    TKCATSNR F N  + +G
Sbjct: 367 KYSNGIDATKCATSNRCFPNPCINRG 392


>SB_30396| Best HMM Match : M20_dimer (HMM E-Value=4e-08)
          Length = 489

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/28 (32%), Positives = 22/28 (78%)
 Frame = +2

Query: 686 SHNLTIKRLKL*SLILCDVITNEVVWQK 769
           +H  T+K+ K+ +++  +V+TN++VW++
Sbjct: 452 AHESTLKQAKILAMVAIEVMTNKLVWEE 479


>SB_29614| Best HMM Match : Flavodoxin_1 (HMM E-Value=0.22)
          Length = 726

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 576 PIREMSIACCTFCGTKVVEIFTHLRSFKPKKKPQSA 683
           P  +  +  C  CG +V  +  HL S  PKK P+S+
Sbjct: 98  PSDKRPLKTCCECGKRVSRLDKHLISAHPKKYPKSS 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,034,082
Number of Sequences: 59808
Number of extensions: 385594
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)