Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0046.Seq
         (760 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)                  29   4.1  
SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)                      29   5.4  
SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           29   5.4  
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)                    28   9.5  
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = +3

Query: 138 HIPYIDYVPRLSQAELIYR----PTSRSVTRLVTYPDVPHHVVGSGSAHPWSSVSWTESL 305
           H+P  D VP+ S   L YR    P  R  T      DV +H V S   +P+  ++ ++ +
Sbjct: 259 HLPRSDNVPKESTPALPYREHVQPQDRMFTNHGHDKDVNYHPVISAPDNPYRDITQSQLM 318

Query: 306 TDAAQHW 326
                 W
Sbjct: 319 DSLTTPW 325


>SB_22120| Best HMM Match : 7tm_1 (HMM E-Value=0.0013)
          Length = 313

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 676 YGWRRPSYRSSAR---TRGCRVQ*TSWLTRDRRKD 581
           Y WR P YR++ R     GCR+     ++RDRR D
Sbjct: 278 YAWRLPKYRNAFREALCNGCRIV-ELVMSRDRRTD 311


>SB_38061| Best HMM Match : DUF995 (HMM E-Value=4)
          Length = 220

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 551 PYAASRIASTIFPSITSQPRSSLDAATSRACTT-PVRRPSPTVATLQGAQHQG 706
           P A SR+  T     T+   +      + A TT P+   +PTVA ++  +H G
Sbjct: 61  PTAQSRVVETTTALFTNDMTTEATQEPTDASTTVPLYEATPTVANMEKNEHDG 113


>SB_19754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = +2

Query: 290 LDRIAYRRRPALAISAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPL 469
           ++R    RRP+L    V  F  + +    EDE   +RA    L HR RS     K+L+ L
Sbjct: 92  MERKKKGRRPSLFRRFVGAFRNNPSNSEAEDEESELRAPPDYLSHRRRS-----KTLSSL 146

Query: 470 DTIYSYSYGEPIPTVS 517
            T   + + EP  T +
Sbjct: 147 PT---FIHNEPETTTN 159


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 249 VVGSGSAHPWSSVSWTESLTDAAQHWPYLPSMTSCAPKQPRLSKMRPVEFAPTLRL*STG 428
           V+     H  SS  +    T A QH+ ++ S        PR + +   E A T+ L S+G
Sbjct: 3   VISFFKPHELSSKKYFRFFTVALQHYGHISS--------PRFAVVTSEEVAKTIGLHSSG 54

Query: 429 LALWCRA 449
             L+CRA
Sbjct: 55  NVLFCRA 61


>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +2

Query: 332 SAVDDFLRSEATKTFEDETRRIRADTAALIHRARSVVPRAKSLAPLDTIYSYSYGEP 502
           + +D FL++ A          + ADTAA +  A   V  +K +  L T+ S ++  P
Sbjct: 661 TVLDSFLKASAAGGLGSVKAEVLADTAAALASANVQVVSSKVIGRLHTLISKTFISP 717


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = -3

Query: 749 REPVLRVKREQVHVILDA 696
           +EP++ +KRE++HV+L A
Sbjct: 691 QEPMIEIKREEIHVVLAA 708


>SB_41578| Best HMM Match : Apc15p (HMM E-Value=2.4)
          Length = 391

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +3

Query: 186 IYRPTSRSVTRLVTYPDVPHHVVGSGSAHPWSSVSWTESLTDAAQHWPYLP 338
           I+RP   S  R +  P  P   +  G A  W S   T+  TD   H P  P
Sbjct: 301 IHRPRDLSAQRSIDPPSKPSTQIFIGLAIHWPSEPSTQRTTDPDIHRPSDP 351


>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 361 FGAQEVIDGRYGQCWAASVSDSVQLTEDHGWADPDPTT*CGTSGYVTSRVTD 206
           +G+QE +   Y  CW+ +  DS+Q  +D   A         + G V + V D
Sbjct: 214 YGSQETL---YHSCWSLAEEDSIQAGQDEDAAKSPSEGQLPSEGAVKAEVVD 262


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,479,813
Number of Sequences: 59808
Number of extensions: 481129
Number of successful extensions: 1499
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)