Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0039.Seq
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)                   34   0.12 
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)                 31   0.64 
SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05)         29   3.4  
SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   29   4.5  
SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)               28   6.0  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       28   7.9  

>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
          Length = 448

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 120 LQCKDLHEYLKSRSPQFLETLYNYPTICLAVYR 218
           LQ KDL+EYL       L+ L+ +P  CL V+R
Sbjct: 17  LQRKDLYEYLSGLPVGILDRLFCHPATCLTVFR 49



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +2

Query: 344 TLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGG 454
           TL +L +W+E P  G    + +  +F+ N+K +L GG
Sbjct: 57  TLKQLRIWREVP-SGVHKRYEMNATFRTNMKAALCGG 92


>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
          Length = 458

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = -3

Query: 627 SGVQHYADGVGADALGLRVAHHVVQHALPALQRVRVQERQSRAFPSGSSD 478
           +G++ ++D  GA A  L++  H  + A+  L RVRVQ+ +   FP+  S+
Sbjct: 348 AGLKLFSDAEGAFAHVLKLDKHC-EDAMFELARVRVQQLEDMGFPTNQSE 396


>SB_38878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 436

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = +2

Query: 254 LLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNL 433
           ++ V  P    VV SWVS    KEQA A  TL   SV     I   +   M   ++ K +
Sbjct: 221 VIHVYGPCALIVVVSWVSFLLPKEQAPARITLGVTSVLTVVTILNMLNNSMPKVNYVKTI 280

Query: 434 KVSLLG 451
              L+G
Sbjct: 281 DKYLIG 286


>SB_57117| Best HMM Match : Peptidase_C48 (HMM E-Value=8.4e-05)
          Length = 524

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
 Frame = +2

Query: 278 PQAVVTSWVS---QTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKNLKVSLL 448
           P  VV  W      +  K Q  A   L E  +      P G   W L  +  K   +  L
Sbjct: 381 PNIVVFPWEQFEKSSIIKRQLSAKGKLLEKDLIIAPCCPAGGNHWFLVVAVPKEKTIFAL 440

Query: 449 GGGRAWSMSSSLEPDGKARDCRSWTRTRWSAGSACCTTW-WATRRP 583
                    S +EP  +A  C+ W   + + GS    TW +A+ +P
Sbjct: 441 DS----LAGSFIEPTAEAAMCKMWHILKKADGSLDIATWRFASNKP 482


>SB_12743| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 922

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 182 LQLPHYMSRCISRITRASTSLRNPLLFVEQPVPQAVVTSWVSQTYAKEQAKACTT 346
           L+LP Y+  CI R T+ +  +      V  PV    +  ++S   A + A   TT
Sbjct: 248 LRLPQYLILCIKRFTKNTFFVEKNATVVNFPVKSVDLAEYLSSDPAVQDAHPHTT 302


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 239 SLRNPLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVW 367
           S R P LF    VP AV+ SWVS   +     +C  L EL  W
Sbjct: 101 SARGPGLFSGNVVPWAVLRSWVSGNVSVLYPASC-HLQELYHW 142


>SB_17678| Best HMM Match : zf-C2H2 (HMM E-Value=8.3e-16)
          Length = 284

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 303 SRRHMPKNKQKHALHCQSSPCGRRRPYRGACRAGCSHSRLKRTSKCHCLGEAGR 464
           SR H  KN+   +  C+   CGR   YRG      SH R+    K +     GR
Sbjct: 134 SRAHTGKNRTYPSKPCKCKECGRSFRYRGHL---SSHQRIHSGEKPYECDICGR 184


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 543  PALQRVRVQERQSRAFPSGSSDDD 472
            P+  R +VQE QS  F SG  D D
Sbjct: 983  PSAYRSKVQEEQSHGFVSGGCDSD 1006


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,987,900
Number of Sequences: 59808
Number of extensions: 435929
Number of successful extensions: 1375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)