Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0035.Seq
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_3746| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_44503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1347

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 435 QYLSQKT*VDYYQSRQCDFWTIIGKSEKRIIDFVFNDKTLLND 307
           Q L  K   DY      D     G+SEK  I ++ NDK++ ND
Sbjct: 40  QDLKAKFKADYGMPENADVIFNEGESEKTFIFYIKNDKSVEND 82


>SB_3746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 160 DNRR-LTYDIHNAVQIIQKCFVVLINVKHHSLI 65
           +NRR L Y + + +Q+I  CF  L  ++H  LI
Sbjct: 7   ENRRSLVYGLTDGMQLIADCFASLDRIEHFLLI 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,627,912
Number of Sequences: 59808
Number of extensions: 395512
Number of successful extensions: 950
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)