Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0027.Seq
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        111   4e-25
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           29   4.8  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  111 bits (268), Expect = 4e-25
 Identities = 47/54 (87%), Positives = 52/54 (96%)
 Frame = +2

Query: 503 GHRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGCR 664
           G RAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGCR
Sbjct: 111 GMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGCR 164



 Score =  111 bits (266), Expect = 7e-25
 Identities = 51/64 (79%), Positives = 61/64 (95%)
 Frame = +1

Query: 64  DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 243
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64

Query: 244 IVLS 255
           IVLS
Sbjct: 65  IVLS 68



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +3

Query: 255 DDNCPDEKIRMNHVVRNNLRVRLSDVV 335
           DD   D+KIRMN VVR NLRVRL DVV
Sbjct: 69  DDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 80  RSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANAARKP 238
           RSSV R   T ++  K S +T ++W     +WSN++    + S SR ++ R P
Sbjct: 364 RSSV-REQATATVMSKGSYITIRNW----TRWSNYSGGGYSISNSRPSSRRNP 411


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
 Frame = -2

Query: 405 QLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSH--QGNYRRE 250
           + N  + +C      S  D   W P  K    GC+SQ     + H  Q  YRRE
Sbjct: 100 KFNITVVMCAYRKDCSFGDWGHWGPAIKTNQPGCYSQKRFQPYRHMTQVTYRRE 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,685,700
Number of Sequences: 59808
Number of extensions: 496178
Number of successful extensions: 1403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)