Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0006.Seq
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21595| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_51823| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)               30   1.8  
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3)                      28   7.2  
SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)                28   7.2  
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         28   7.2  

>SB_21595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -3

Query: 229 LHNKQRNSVPEKGFEKFKEDINFNGSE*SLRRIMKELGFRWKKRTENNRKLVNEKSNIRL 50
           L N   + +PEK  EK++ DI+ N +  + +RI+    F  ++ T +    V     I L
Sbjct: 86  LFNFYLSDLPEKLNEKYRNDIDLNDAMFASKRILPVREFNTRRYTSDEVNKVRSVFEITL 145

Query: 49  LRIEYL-QKIIY 17
           L   Y+ QK IY
Sbjct: 146 LLKRYMPQKWIY 157


>SB_51823| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
          Length = 382

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = -2

Query: 419 EKLKQTSEATKTSVCTVRCIINEAKGSGLLTVFRTPGKKRSGKKKVTGMDSFVQ 258
           +K +Q +  + T + +  C+++   G+G+  +F     ++ G+   T MDS  Q
Sbjct: 59  KKRRQRTFTSTTCLLSAICLLHSIVGAGIREIFHAFTAEQQGENYKTAMDSLTQ 112


>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1422

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -3

Query: 220 KQRNSVPEKGFEKFKEDINFNGSE*SLRRIMKELGFRWKKRTENNRKLVNEKSN 59
           KQ   VPE+G  +FK+D++ +  E  +    + +  R+  R EN    V E+S+
Sbjct: 54  KQEFQVPERGCIQFKDDLDSDDEESEVDDDARSIPVRFSPR-ENKESQVQEESS 106


>SB_38060| Best HMM Match : ITAM (HMM E-Value=1.3)
          Length = 401

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
 Frame = +2

Query: 476 YP-FF*VLHQFVRHSVCFIKNQQTLNK*QWQQSPQAIITNNLTVNNGRLSTVRKRTFGSK 652
           YP +  +LH    +S  F+  + T +  Q QQ   A+    +   +  L T   +TF   
Sbjct: 305 YPTYITILHNRQTYSHYFLDGKLTCSGFQRQQLKNAMDPPPVYSESSELRTTANKTFPCN 364

Query: 653 RNEGAVRAQGSTDLPITRSIRFPLPSRLHPHHQSD 757
            ++         + P  +    PL   + PH  SD
Sbjct: 365 DDDYVCMDGSEYETPANQFAECPLYQSVPPHPSSD 399


>SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)
          Length = 318

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 407 QTSEATKTSVCTVRCIINEAKGSGLL 330
           +T +AT+T +   R +INE +G GLL
Sbjct: 194 KTRQATRTVLNNARDVINELRGGGLL 219


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 658 VPLAPKSTLAYSGKSTVINR*VV-CYNC 578
           VPL    T  Y G++TVI + V  CY C
Sbjct: 140 VPLVESGTAGYLGQTTVIKKGVTECYEC 167


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,323,046
Number of Sequences: 59808
Number of extensions: 429119
Number of successful extensions: 1089
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)