Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C10f
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             27   5.3  
SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)             27   5.3  
SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +2

Query: 5   STVLRCCLWMIRCFDAFNRLRYYVCKIEMLPWLIFDATFSLQSGKHSCENNSGFIFHLIS 184
           STV+ CC + + C D  N        IE    LI +      + K   E+   +I H++ 
Sbjct: 573 STVVACCTFYVICQDMINH-------IEHTTDLIINNARDFTTAKRFHESLLDYIDHVVQ 625

Query: 185 PVR-YALTHSNLVGIFVLIQCCVLI 256
            ++ + + H   VG F+LI   V +
Sbjct: 626 SIKCWFVVH---VGFFMLITLSVAV 647


>SB_58170| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 317 NHSSYSKLYDALTNSIKWCTKLIHSIE*ARKCLLD 213
           N +   KL  +L+N  K C+K + SIE A++  LD
Sbjct: 49  NKTETLKLDRSLSNYDKQCSKAVKSIEFAQRSFLD 83


>SB_43952| Best HMM Match : Spindle_assoc (HMM E-Value=2.3)
          Length = 310

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 317 NHSSYSKLYDALTNSIKWCTKLIHSIE*ARKCLLD 213
           N +   KL  +L+N  K C+K + SIE A++  LD
Sbjct: 49  NKTETLKLDRSLSNYDKQCSKAVKSIEFAQRSFLD 83


>SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 101 LIFDATFSLQSGKHSCENNSGFIFHLISPVR 193
           ++FD +F       SC N+ G+ +H  S VR
Sbjct: 667 VLFDDSFDDSLSISSCANSGGYYYHSYSVVR 697


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,831,603
Number of Sequences: 59808
Number of extensions: 189781
Number of successful extensions: 409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)