Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301C09f
         (315 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   3e-08
SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)                      35   0.016
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.0  
SB_38336| Best HMM Match : UCR_TM (HMM E-Value=4.6)                    27   2.4  
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   27   4.2  
SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_30126| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_34004| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)             25   9.8  
SB_28781| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_43237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
 Frame = +1

Query: 160 SATSQASIKFYSTA--SYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFXEL 315
           SA+S    + + +A  SYE+I  E  G   NVG IQLNRPKALNALC  L  EL
Sbjct: 20  SASSLRYTRAFCSAKKSYEHILTETKGESNNVGFIQLNRPKALNALCNDLMYEL 73


>SB_32164| Best HMM Match : ECH (HMM E-Value=0.02)
          Length = 280

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +1

Query: 235 SKKNVGLIQLNRPKALNALCKPLFXEL 315
           +K N G+I +NRPKALNAL  P+  ++
Sbjct: 90  TKNNAGIITMNRPKALNALNLPMIRKI 116


>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +3

Query: 99  CRYCNSCFAGKECTEQVQSGIRN-KPSIYKV 188
           C YC++C  GK+   + QS I N KP I  V
Sbjct: 321 CDYCDACLKGKDKRLEFQSLIDNYKPDIVNV 351


>SB_38336| Best HMM Match : UCR_TM (HMM E-Value=4.6)
          Length = 165

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 257 MSPTFFLEPTTSTLMFSYDAVL*NFIDAWLVADTTLHLFSTFFPSKARVTVATEAI 90
           ++PT  L+  TS     YD+ L +    WL+  + L  F T++    ++T+A + +
Sbjct: 27  ITPTTPLDSWTSD-QSGYDSHLASTFSEWLMGFSFLLFFMTYYREFKKITIAIKVV 81


>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 181 IKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPL 303
           I  Y    +  IK+EV+G KK V ++     + L A+C  L
Sbjct: 571 IVLYLFLKFVFIKIEVIGKKKTVLMLYNISGRHLRAICARL 611


>SB_33107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1079

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 76  FIFLKMA-SVATVTRALLGKNVLNKCKVVSATSQASIK 186
           F+F +   ++  VTRAL  + VL++CK++    Q ++K
Sbjct: 488 FLFTRTPPTIGGVTRALT-ETVLSRCKIIMGFYQVTLK 524


>SB_30126| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +1

Query: 91  MASVATVTRALLGKNVLNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNR 270
           +A   + TRA LGK      + +S T   + ++ S    E + + +  S +     Q+  
Sbjct: 92  LAKQVSRTRATLGKTGCENARYLSQTGCENARYLSQTGCEKLVLPLPNSLRERCFYQVTG 151

Query: 271 PK 276
           PK
Sbjct: 152 PK 153


>SB_34004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 93  GFCRYCNSCFAGKECTEQVQSGIRNKP 173
           G+   C S F GK C   V   +  KP
Sbjct: 148 GYTCKCTSGFTGKNCENDVNECVTKKP 174


>SB_44841| Best HMM Match : 7tm_1 (HMM E-Value=4.79999e-40)
          Length = 1198

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 249 RTHSVKPPEGTECSMQTI 302
           RTHS +P  G  CS+ T+
Sbjct: 526 RTHSTRPVHGHACSLTTL 543


>SB_28781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 232 GSKKNVGLIQLNRPKALNALCK 297
           GS + + L   NRP+A NA+ K
Sbjct: 55  GSHEGIALFTFNRPEAKNAMSK 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,742,334
Number of Sequences: 59808
Number of extensions: 186500
Number of successful extensions: 443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)