Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C03f
(373 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 98 3e-28
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 31 0.39
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 25 0.71
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 2.8
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 28 2.8
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 24 6.1
SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6) 27 6.4
SB_37509| Best HMM Match : PAE (HMM E-Value=0) 27 6.4
SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9) 27 6.4
SB_59641| Best HMM Match : PAE (HMM E-Value=0) 27 6.4
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 27 6.4
SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034) 27 6.4
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23) 26 8.5
SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 26 8.5
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 23 9.1
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.3 bits (234), Expect(2) = 3e-28
Identities = 42/56 (75%), Positives = 50/56 (89%)
Frame = +3
Query: 12 DIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 179
++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 589 ELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 43.6 bits (98), Expect(2) = 3e-28
Identities = 17/31 (54%), Positives = 24/31 (77%)
Frame = +3
Query: 279 QLTDISDDGYLTLMADNGDLREDLKIPDGDL 371
++T+I +DGYL LM DNGD R D+K+ D D+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDI 673
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 30.7 bits (66), Expect = 0.39
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 13 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 147
T+K HT++P T P P N+ P + + +L ++H + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 13 TSKTHTSRPETPGPQPPSPCNVRP 84
T+K HT++P T PQ P +P
Sbjct: 68 TTKPHTTKPRTTKPQTTKPHTTKP 91
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 13 TSKTHTSRPETPGPQPPSPCNVRPC 87
T+K +T++P T P+ P +PC
Sbjct: 108 TNKPYTTKPRTTKPRTTKPHTTKPC 132
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +1
Query: 13 TSKTHTSRPETPGPQPPSPCNVRP 84
T+K T++P T P PC +P
Sbjct: 113 TTKPRTTKPRTTKPHTTKPCTTKP 136
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.7 bits (66), Expect = 0.39
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 1 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 156
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.6 bits (51), Expect(2) = 0.71
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 64 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 222
+PC ++ C + +S+ V ++K P P TL ++G + +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450
Score = 23.8 bits (49), Expect(2) = 0.71
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 46 PGPQPPSPCNVRP 84
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 90 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 209
+ G +M +G+PCKI + K G HG +H+ G D NG
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = +3
Query: 204 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 332
NG Y CP N D + EDY + D YLT D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.9 bits (59), Expect = 2.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 16 SKTHTSRPETPGPQPPSPCNV 78
++T T++PET P+PP+P +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 27.9 bits (59), Expect = 2.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 10 VTSKTHTSRPETPGPQPPSPCNVRP 84
VT K T +P TP P P P RP
Sbjct: 768 VTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 27.5 bits (58), Expect = 3.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 16 SKTHTSRPETPGPQPPSP 69
++T T +P TP P PP+P
Sbjct: 288 TRTPTPKPRTPTPSPPTP 305
>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1005
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 31 SRPETPGPQPPSPCNVRP 84
+RP TPG +PP P N P
Sbjct: 166 TRPTTPGMRPPEPINDAP 183
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 315 GSGSHHPRYQSVGSLRASRGVRPC-CVWRDRYL 220
G+GS HP Y +V V PC C W+ + L
Sbjct: 517 GAGSPHPHYHAVQGANGQYSV-PCNCTWQPQDL 548
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 23.8 bits (49), Expect(2) = 6.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 16 SKTHTSRPETPGPQPPSPCNVRPCV 90
SK+H + T GP+ SP N R +
Sbjct: 4412 SKSHPMQARTQGPRTHSPYNGRKSI 4436
Score = 21.0 bits (42), Expect(2) = 6.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 136 KCPHPKPESTATLKFTWLGLISSMVKSMK 222
K P P ++ FTW ISS+ SM+
Sbjct: 4474 KNPGYGPAKELSIAFTWGFSISSLRSSMQ 4502
>SB_52495| Best HMM Match : AT_hook (HMM E-Value=4.6)
Length = 183
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 121 GRPFSITKPFLRRAEHCMGKVAEAPE 44
GRP +P L EHC GK+ E P+
Sbjct: 134 GRPRE--QPVLAEVEHCHGKLTERPK 157
>SB_37509| Best HMM Match : PAE (HMM E-Value=0)
Length = 483
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/48 (20%), Positives = 19/48 (39%)
Frame = +1
Query: 112 RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKISVPPHTTWTY 255
+++H R + C P ++ + L V + PH +W Y
Sbjct: 334 QIIHVRGVSCEPPDYREAQRMRTNSIDLTRGHVSRRSLPNKPHPSWAY 381
>SB_31608| Best HMM Match : DUF298 (HMM E-Value=3.9)
Length = 203
Score = 26.6 bits (56), Expect = 6.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -1
Query: 121 GRPFSITKPFLRRAEHCMGKVAEAPE 44
GRP +P L EHC GK+ E P+
Sbjct: 154 GRPRE--QPVLAEVEHCHGKLTERPK 177
>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
Length = 1252
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/48 (20%), Positives = 19/48 (39%)
Frame = +1
Query: 112 RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMKISVPPHTTWTY 255
+++H R + C P ++ + L V + PH +W Y
Sbjct: 1103 QIIHVRGVSCEPPDYREAQRMRTNSIDLTRGHVSRRSLPNKPHPSWAY 1150
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 26.6 bits (56), Expect = 6.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 256 GTSMLCVEGQISSYFLPLKISIPTK*TLAWPCFPVL 149
GT L +GQ+S +FL + IS P L CF +L
Sbjct: 962 GTDKLISDGQVSHFFL-IDISYPCNVLLDKDCFILL 996
>SB_30225| Best HMM Match : Peptidase_S8 (HMM E-Value=0.0034)
Length = 605
Score = 26.6 bits (56), Expect = 6.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +1
Query: 19 KTHTSRPETPGPQPPSP 69
K H +P P P PPSP
Sbjct: 344 KEHPDKPRDPAPVPPSP 360
>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 26.6 bits (56), Expect = 6.4
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Frame = +3
Query: 24 THFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT-----GKHGHAKVHLV 188
T E+G + P QC+ + F+ RP + + S ++ G + L
Sbjct: 865 TRRESGQRVSHGLSPKQCAVSVVSSFMDSGARPRRFLPGSQARPRRFLPGSQPRPRRFLP 924
Query: 189 GIDIFNGKKYE--DICPSTHNMDVPHVKREDYQLTDISD-DGYLTLMADNGDLREDLKIP 359
+ + G Y ++ P +D+ + Y++ ++ D YL L D GD LK+
Sbjct: 925 VLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYPVLKLD 984
Query: 360 DGD 368
GD
Sbjct: 985 PGD 987
>SB_54310| Best HMM Match : Aa_trans (HMM E-Value=1.9e-23)
Length = 977
Score = 26.2 bits (55), Expect = 8.5
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 90 KNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 197
K+G ++L GR C++ + ++ KH + VH ID
Sbjct: 837 KDGRILLYGRVCEMERIIRTEKRKHSISLVHESEID 872
>SB_40632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 776
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 165 GHAKVHLVGIDIFNGKKYEDICPSTHNMDVPHV 263
G + H + + NGK+Y D+C + + VP V
Sbjct: 50 GALRYHEGNLQVCNGKEYVDVC-ANNRASVPEV 81
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 31 SRPETPGPQPPSPCN 75
+RP TPG +PP P N
Sbjct: 52 TRPTTPGMRPPEPIN 66
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 23.4 bits (48), Expect(2) = 9.1
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +1
Query: 46 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLI 198
P P PPSP RP R + A+L + P P P TL LG +
Sbjct: 217 PPPPPPSPSPPRPPPPPPPSPPRPLAAKLPE-PPPIPNMPPTLPPPTLGYL 266
Score = 21.0 bits (42), Expect(2) = 9.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 13 TSKTHTSRPETPGPQPP 63
TS + ++P P P+PP
Sbjct: 196 TSPSQITQPPPPPPRPP 212
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,786
Number of Sequences: 59808
Number of extensions: 292570
Number of successful extensions: 966
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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