Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301C02f
(506 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 8e-06
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.034
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 35 0.034
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016) 32 0.31
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 31 0.41
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 30 0.95
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_53196| Best HMM Match : PerC (HMM E-Value=1.4) 29 2.9
SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39) 29 2.9
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 5.1
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21) 27 6.7
SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12) 27 6.7
SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16) 27 6.7
SB_8548| Best HMM Match : Sushi (HMM E-Value=0.00061) 27 8.9
>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 47.6 bits (108), Expect = 6e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +3
Query: 189 MVFCTSKLEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 362
+V+ +++++V AN F +LRGL GD N E YD+F+ P G+ + +F A+RL
Sbjct: 6 VVYMSNRIQV---HANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 60
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 47.2 bits (107), Expect = 8e-06
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +3
Query: 225 IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 362
+ AN F +LRGL GD N E YD+F+ P G+ + +F A+RL
Sbjct: 1425 VHANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQFQKAWRL 1470
>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 243 YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 362
Y G GL G+ N P DDF + NG+ S+ EFG ++ L
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDREFGKSWSL 215
>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 35.1 bits (77), Expect = 0.034
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 261 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 362
GLLG NNE +D+ PNGK S EF N++ +
Sbjct: 63 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 96
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 35.1 bits (77), Expect = 0.034
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +3
Query: 261 GLLGDGNNEPYDDFRLPNGKICTSESEFGNAYRL 362
GLLG NNE +D+ PNGK S EF N++ +
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFVNSWEV 1844
>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
Length = 237
Score = 31.9 bits (69), Expect = 0.31
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 210 LEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESEFGNA 353
L V + FY G GL GD +N P +DF P G+ T +F +
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGERFTDAVQFAES 233
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 31.5 bits (68), Expect = 0.41
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 1187 SSSTVNVSAISTTSSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 1244
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 429
S +TS L+ SA+ +S T V+ + R P S ++ P+
Sbjct: 1245 PSPNITSYPLLTTSAVGNFTSATSVVFDSTTPNATR-LVPSISASISPN 1292
Score = 30.7 bits (66), Expect = 0.72
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T T +T AVF T+T
Sbjct: 383 SSSTVNVSAISTTSSIESTIMESVAS--SIQLNITSNTTMAVNDTLTTTSTSAVFPTTIT 440
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 429
S +TS + SA+ +S T V+ + R P S ++ P+
Sbjct: 441 PSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATRV-VPSISASISPN 488
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T+ T T AVF T+T
Sbjct: 1790 SSSTVNVSAISTTSSIESTIMESVAS--SIQLNITSNTMMAVNDTLKTTSTSAVFPTTIT 1847
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKR 390
S +TS + SA+ +S T V+ + R
Sbjct: 1848 PSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATR 1883
Score = 29.1 bits (62), Expect = 2.2
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 785 SSSTVNVSAISTTSSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 842
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 429
S +TS + SA+ +S T V+ + R P S ++ P+
Sbjct: 843 PSPNITSYPSLTTSAVGNFTSATSVVFDSTTPNATR-LVPSISASISPN 890
Score = 28.7 bits (61), Expect = 2.9
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 1388 SSSTVNVSAISTTSSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 1445
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 429
S +TS + SA+ +S T V+ + R P S ++ P+
Sbjct: 1446 PSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATR-LVPSISASISPN 1493
Score = 27.1 bits (57), Expect = 8.9
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S L++ T T T AVF T+T
Sbjct: 584 SSSTVNVSAISTTSSIESTIMESVAS--SIQLSITSNTTMAVNDTLKTTSTSAVFPTTIT 641
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 429
S +TS + SA+ +S T V + R P +S ++ P+
Sbjct: 642 PSPNITSYPSLMTSAVGNFTSATSVVVDSTTPNATR-LVPSSSASISPN 689
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 30.3 bits (65), Expect = 0.95
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 165 SSSTVNVSAISTTSSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 222
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 429
S +TS + SA+ +S T V+ + P P S ++ P+
Sbjct: 223 PSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTP-VPSISASISPN 270
Score = 27.5 bits (58), Expect = 6.7
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S ES + S S LN+ T T T AVF T+T
Sbjct: 366 SSSTVNVSAISTTSLIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 423
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPRLRTGL 450
S +TS + SA+ +S T V+ + T + S + SP + T +
Sbjct: 424 PSPNITSYPSLMTSAVGNFTSATSVVFDSTT---PNATTLVPSISASISPNVTTNM 476
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.5 bits (63), Expect = 1.7
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 584 SSSTVNVSAISTTPSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 641
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVW 363
S +TS L+ SA+ +S T V+
Sbjct: 642 PSPNITSYILLMTSAVGNFTSATSVVF 668
Score = 27.5 bits (58), Expect = 6.7
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 282
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 182 SSSTVNVSAISTTSSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 239
Query: 283 TSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPSPRL 438
S +TS + SA+ +S T V+ + T + S T SP +
Sbjct: 240 PSPNITSYPSLMTSAVGNFTSATSVVFDSTT---PNATTLVPSITASISPNV 288
Score = 27.1 bits (57), Expect = 8.9
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +1
Query: 193 SSAHLNLRCATLKL---TASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVW 363
SS LN+ T T T AVF T+T S +TS + SA+ +S T V
Sbjct: 6 SSIQLNITSNTTMAVNDTLKTTSTSAVFPTTITPSHNITSYPSLMTSAVGNFTSATSVVV 65
Query: 364 PAAVHRCKRPNTPITSCTMHPSPRLRTGLRGNI 462
+ R P +S ++ P+ + NI
Sbjct: 66 DSTTPNATR-LVPSSSASISPNVTINMTREANI 97
>SB_53196| Best HMM Match : PerC (HMM E-Value=1.4)
Length = 169
Score = 28.7 bits (61), Expect = 2.9
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Frame = +1
Query: 139 LSVNQATESVLAHCTVSWSSAHLNLRCATLKL-----TASTWVNFAVFSE-TVTTSLTMT 300
+S+ +A+ESV++ S S LNLR A+ ++ T ++ VN SE TV +
Sbjct: 32 VSLRRASESVVSLRRASESM--LNLRRASERIVNSLRTPASVVNLRKASERTVNLRIASE 89
Query: 301 SGYLMERS----ALRKASS--VTRTVWPAAVHRCKRPNTPI 405
S ++ R+ L +AS +R WP R RP +P+
Sbjct: 90 SVLILRRAQRAWTLFRASKHKYSRKYWPVINERSMRPGSPV 130
>SB_47534| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 238 ASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASSVTRTVWPAAVH 378
A +W + + + T + L+ T Y+M SA AS +RT + +H
Sbjct: 386 APSWTSTTLLNLTHSRVLSRTVEYVMHSSACHAASCTSRTTYVNVMH 432
>SB_35402| Best HMM Match : Collagen (HMM E-Value=0.39)
Length = 657
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 378 QVQAPEHSHHQLHDASLPPPANRSSGEYRRSGP 476
Q+QAP+ HQL P ++ G+Y P
Sbjct: 323 QLQAPQQQQHQLQQQQKPEENKKAKGKYEPKQP 355
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.9 bits (59), Expect = 5.1
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Frame = +1
Query: 112 SRSSKRMCSLSVNQATESVLAHCTVSW-SSAHLNLRCATLKL---TASTWVNFAVFSETV 279
S S ++SV T S+ + S SS LN+ T T T AVF T+
Sbjct: 89 STISSSTVNVSVISTTSSIESTIMASVASSIQLNITSNTTMAVNDTLRTTSTSAVFPTTI 148
Query: 280 TTSLTMTSGYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHPS 429
T S +TS + SA+ +S T V+ + R P S ++ P+
Sbjct: 149 TPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATR-LVPSISASISPN 197
>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
Length = 1033
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 112 NPLEAPFRIACPFSFNSMIAPLLSSKIRAL 23
+PL+ +R+ PF F+ I LS K R L
Sbjct: 603 SPLQGRYRVLLPFRFSGCIMGYLSRKARIL 632
>SB_23646| Best HMM Match : ASC (HMM E-Value=1.4e-12)
Length = 885
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +3
Query: 165 GVGSLYGLMVFCTSKLEVCYI--EANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSES 338
G GS+Y C + V YI E NG L L N P +F + C ++
Sbjct: 27 GAGSIYAFCNHCKKDISVVYIKSENNGKELSVAESLT---NKWPRSEFPENDYDKCLKDN 83
Query: 339 EFGNAYRL 362
++G +L
Sbjct: 84 DYGGCKKL 91
>SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16)
Length = 560
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 317 KDLHFGKRVR*RVPSGPQLSTGASARTLP-SPAARCIPPPACEQVFGGISPLRT 475
++ HF + +P+ PQ +GA A T P +PAA P C +P T
Sbjct: 439 RNRHFLRAYTPALPTIPQAPSGAPAETPPVAPAAPFPPSQTCHHTNRTATPATT 492
>SB_8548| Best HMM Match : Sushi (HMM E-Value=0.00061)
Length = 425
Score = 27.1 bits (57), Expect = 8.9
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Frame = +3
Query: 48 SGAIIELKENGQAI--LNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVC 221
+G I+EL+E G I N +P + K FR + I V ++ G T L++
Sbjct: 44 NGEIVELEEQGGTIEIQNAWVMKYPNVSKYSAIFR---SGISV-TVQGY----TDLLQMM 95
Query: 222 YIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSES 338
+ F G GLLG +++ +F LPNG +ES
Sbjct: 96 LLVPQKFK-GDTTGLLGLWDDDKTREFLLPNGSFIGTES 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,434,777
Number of Sequences: 59808
Number of extensions: 390992
Number of successful extensions: 1299
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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