Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B06f
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.6  
SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)             27   6.2  
SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09)                      27   6.2  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          27   6.2  
SB_38100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_1296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 954

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 280 TSGQLLRLHTMIHSNINSNEDIIN 351
           T+GQ  + H + HS++N N D IN
Sbjct: 650 TNGQEPQTHKLSHSDVNQNPDSIN 673


>SB_26583| Best HMM Match : adh_short (HMM E-Value=2.4e-15)
          Length = 355

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 100 ELSRCLRALLDEITNRLSSLY-TPPPFFFWV 189
           E SRC + ++  +TN+L  L+ +P P  F++
Sbjct: 269 ETSRCAQLIVTGVTNKLDELWISPNPILFFL 299


>SB_211| Best HMM Match : ig (HMM E-Value=7.2e-09)
          Length = 206

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 130 DEITNRLSSLYTPPPFFFWVSYRPPLSLKCPQGGVIAH 243
           D++    S+  TPPP F W+S         PQG ++AH
Sbjct: 19  DQVNLTCSADGTPPPTFTWIS---------PQGHIVAH 47


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 130 DEITNRLSSLYTPPPFFFWVSYRPPLSLKCPQGGVIAH 243
           D++    S+  TPPP F W+S         PQG ++AH
Sbjct: 368 DQVNLTCSADGTPPPTFTWIS---------PQGHIVAH 396


>SB_38100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 247 GKGWPIVXLCFTSGQLLRLHTMIHSNIN 330
           G   PI  L +T G  + L+ M+H N+N
Sbjct: 323 GNERPISGLKYTDGAAIDLYHMLHDNVN 350


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,185
Number of Sequences: 59808
Number of extensions: 214242
Number of successful extensions: 371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)