Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS301A07f
(412 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 161 3e-40
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 6e-39
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 6e-39
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 2e-38
SB_56| Best HMM Match : Actin (HMM E-Value=0) 155 2e-38
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 4e-38
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 2e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 9e-10
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 9e-10
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 6e-09
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 35 0.030
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.28
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.28
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.65
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 30 0.65
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 30 0.85
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 30 0.85
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 30 0.85
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 30 0.85
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.85
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 29 1.1
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 29 2.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 27 4.5
SB_35006| Best HMM Match : PT (HMM E-Value=3.4) 27 4.5
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 4.5
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 27 4.5
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 27 4.5
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 27 4.5
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 27 4.5
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 6.0
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 27 7.9
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 27 7.9
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 27 7.9
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 27 7.9
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015) 27 7.9
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 27 7.9
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 27 7.9
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 161 bits (390), Expect = 3e-40
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 3e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 156 bits (379), Expect = 6e-39
Identities = 72/75 (96%), Positives = 74/75 (98%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 3e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 156 bits (379), Expect = 6e-39
Identities = 70/75 (93%), Positives = 74/75 (98%)
Frame = +3
Query: 102 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 281
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 282 SKRGILTLKYPIEHG 326
SKRGILTLKYPIEHG
Sbjct: 61 SKRGILTLKYPIEHG 75
Score = 71.3 bits (167), Expect = 3e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 71 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 103
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 155 bits (375), Expect = 2e-38
Identities = 70/73 (95%), Positives = 73/73 (100%)
Frame = +3
Query: 108 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 287
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 288 RGILTLKYPIEHG 326
RGILTLKYPIEHG
Sbjct: 62 RGILTLKYPIEHG 74
Score = 32.7 bits (71), Expect = 0.12
Identities = 14/21 (66%), Positives = 14/21 (66%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTF 375
P IVTNWDDMEKI TF
Sbjct: 70 PIEHGIVTNWDDMEKIMFETF 90
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 155 bits (375), Expect = 2e-38
Identities = 71/73 (97%), Positives = 73/73 (100%)
Frame = +3
Query: 108 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 287
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 288 RGILTLKYPIEHG 326
RGILTLKYPIEHG
Sbjct: 62 RGILTLKYPIEHG 74
Score = 71.3 bits (167), Expect = 3e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 70 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 153 bits (372), Expect = 4e-38
Identities = 70/73 (95%), Positives = 73/73 (100%)
Frame = +3
Query: 108 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 287
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 288 RGILTLKYPIEHG 326
RGILTLKYPIEHG
Sbjct: 62 RGILTLKYPIEHG 74
Score = 71.3 bits (167), Expect = 3e-13
Identities = 29/33 (87%), Positives = 29/33 (87%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEHP 411
P IVTNWDDMEKIWHHTFYNELRVAPEEHP
Sbjct: 70 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 102
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 61.7 bits (143), Expect = 2e-10
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%)
Frame = +3
Query: 120 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 293
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 294 ILTLKYPIEHG 326
+L + YP+++G
Sbjct: 67 MLEVNYPMDNG 77
Score = 34.7 bits (76), Expect = 0.030
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 307 NTPSNTEIVTNWDDMEKIWHHTF 375
N P + IV NWDDM+ +W +TF
Sbjct: 71 NYPMDNGIVRNWDDMKHVWDYTF 93
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 9e-10
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +3
Query: 111 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 227
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 9e-10
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +3
Query: 126 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 227
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 6e-09
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +3
Query: 96 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 266
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 267 GDEAQSKRGILTL 305
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 224 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 108
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 34.7 bits (76), Expect = 0.030
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 313 PSNTEIVTNWDDMEKIWHHTFYNELRVAPEEH 408
P IV +WD ME+ W + LR PE+H
Sbjct: 301 PIRHAIVEDWDLMERFWEQCIFKYLRAEPEDH 332
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.28
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 199 GNTARGASSPAKPALHIPEPLSTT 128
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.28
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 199 GNTARGASSPAKPALHIPEPLSTT 128
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 0.65
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 199 GNTARGASSPAKPALHIPEPLSTT 128
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 30.3 bits (65), Expect = 0.65
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 216 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 411 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 29.9 bits (64), Expect = 0.85
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Frame = -3
Query: 287 FALCLISYI--RVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQR 123
FA CL + V+LSH + H L A +HG R+ SCET L H A + +
Sbjct: 462 FATCLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKH 520
Query: 122 GNFFVAHLELVK 87
G V L+ K
Sbjct: 521 GQVDVLLLDFQK 532
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 274 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 252 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 94 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 29.9 bits (64), Expect = 0.85
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C V+LSH + H M D +HG RS SCET L T
Sbjct: 128 ICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H M D +HG RS SCET L T
Sbjct: 176 ICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 114 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 293
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 294 ILTLKY--PIEHG 326
L Y P + G
Sbjct: 284 YSALFYVLPFQKG 296
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 199 GNTARGASSPAKPALHIPEPLSTT 128
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 199 GNTARGASSPAKPALHIPEPLSTT 128
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 245 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_35006| Best HMM Match : PT (HMM E-Value=3.4)
Length = 325
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -1
Query: 331 RFPCSMGYLRVRIPLLLCASSPT*ESFCPIPTITP*WRGLPT 206
R P G + +++ LLL +SSP S PI TP +GL T
Sbjct: 269 RNPFYDGVIDIKLNLLLLSSSPMFLSAVPIAPHTPTLQGLHT 310
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 214 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 104
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 106 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 1644 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 672 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
LC + ++LSH + H L +HG R +SCET L T
Sbjct: 857 LCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 270 LLHKSPSVPYRPS--RPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPT 124
LL +S P +P+ RP GGA P++ ++ + N+ T+ PT
Sbjct: 92 LLDESTEAPPQPATIRPQGGALPQTPVKGKQNKRVSDNKEFTHAMQARRPT 142
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 276 PHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLLRR 106
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 227 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 1082 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 25 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 281 LCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 147
+C ++LSH + H L A +HG R +SCET L T
Sbjct: 106 ICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 6.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 120 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 224
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.1 bits (57), Expect = 6.0
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = -1
Query: 292 PLLLCASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAKP 161
P C S P F +P P W LP+ E N G SS A P
Sbjct: 2225 PRAECESDPVDSLFSEVP---PEWSTLPSPEQNAFGGDSSWASP 2265
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 257 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNFFVAHLELVK 87
V+LSH + H L A +HG R+ SCET L H A + + G V L+ K
Sbjct: 4 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLDFQK 62
>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 209
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 257 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNFFVAHLELVK 87
V+LSH + H L A +HG R+ SCET L H A + + G V L+ K
Sbjct: 104 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLDFQK 162
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 257 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNFFVAHLELVK 87
V+LSH + H L A +HG R+ SCET L H A + + G V L+ K
Sbjct: 104 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLDFQK 162
>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 221
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 257 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNFFVAHLELVK 87
V+LSH + H L A +HG R+ SCET L H A + + G V L+ K
Sbjct: 137 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLDFQK 195
>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
Length = 224
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 257 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNFFVAHLELVK 87
V+LSH + H L A +HG R+ SCET L H A + + G V L+ K
Sbjct: 54 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLDFQK 112
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 257 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNFFVAHLELVK 87
V+LSH + H L A +HG R+ SCET L H A + + G V L+ K
Sbjct: 726 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLDFQK 784
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 26.6 bits (56), Expect = 7.9
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 99 KMCDEEVAALVVDNG-SGMCKAGFAGD 176
++CD++ + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -3
Query: 257 VLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNFFVAHLELVK 87
V+LSH + H L A +HG R+ SCET L H A + + G V L+ K
Sbjct: 810 VVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQVDVLLLDFQK 868
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 164 TGLAHTGAIVYYQRGNFFVAHLELVKLVRC 75
+G +T A VY+QRGN + H + V + C
Sbjct: 358 SGRGNTWA-VYFQRGNTWTVHFQRVNTMGC 386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,514
Number of Sequences: 59808
Number of extensions: 373394
Number of successful extensions: 1148
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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