Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0070.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_43250| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07)                   27   9.9  

>SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 622 ANPYFMTRCDESLRNDGIFYGC 557
           + PYF+    ES R D IF GC
Sbjct: 136 SRPYFLPELSESSRTDWIFMGC 157


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 393  TKESRTETAFKLSSTVRTRSVSIDEADN 476
            TKE+  ET+ KLS T + RS  + E D+
Sbjct: 3164 TKENLEETSTKLSETEKLRSSEVSERDS 3191


>SB_43250| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 617 SLFYDTLRRKFEKRWHILWVLV 552
           ++F+ TL  K E  WH+ W+LV
Sbjct: 25  AIFWVTLVTKQESLWHLSWILV 46


>SB_2051| Best HMM Match : LicD (HMM E-Value=1.7e-07)
          Length = 328

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 454 CP*MKRIISFMCTLSLSGPGCPNVRHKLSSA 546
           CP   R +   C L   G  CP++RH  SS+
Sbjct: 89  CPRSYRELGGKCNLGKEGFDCPDIRHTGSSS 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,321,220
Number of Sequences: 59808
Number of extensions: 288614
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)