Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0026
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.35 
SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_30095| Best HMM Match : HCV_core (HMM E-Value=1.7)                  29   2.5  

>SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 100 KTR*RNITSCNKNQTRKVIVCIITGGRTSCESARVGTTTLPSSAVKQ*CVSVEGWGSRCT 279
           KTR R I++  +++    ++ +++  R      RV   ++ S  V   C  VEGWGSR  
Sbjct: 103 KTRLRTISTFTQDRRNGSVLLLLSPLRAPLRDVRVTAWSVSSYRV---CRDVEGWGSRAD 159

Query: 280 V*SETLQLMTQR 315
           +      +M  R
Sbjct: 160 IRIHAYPVMLSR 171


>SB_35265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -2

Query: 648 LITFIIL*HLIVPIGNIIYINLFKIQILVDMYSIFNLT 535
           +IT II   +I+ I N+I +N+  I I++D   I N+T
Sbjct: 237 IITIIIFNVIIIIIVNVIIVNVIIITIIIDNVIIVNVT 274


>SB_30095| Best HMM Match : HCV_core (HMM E-Value=1.7)
          Length = 136

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 353 EPIDIYNVNATTHL*VMSCKVSL*TVQRLPHPSTETHYCFTAELGRVVVPTRADSQDV 180
           EP+     + ++ L ++   +S  T Q + HP+     CF A+L R V  TR  S+ V
Sbjct: 71  EPLQGVANHLSSALELLEIWISSNTGQLVSHPAAVCQVCFVAQLLRTVSHTRTVSKSV 128


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,136,548
Number of Sequences: 59808
Number of extensions: 384444
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)