Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0018
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                   66   1e-11
SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   3e-11
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.39 
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_20586| Best HMM Match : MerR (HMM E-Value=0.002)                    28   3.6  
SB_13047| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=7)              28   3.6  
SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1)                    28   4.8  

>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
 Frame = +2

Query: 11  PNSIYDVLTHLKNKYNDPIFYVTENGWAT------SPEVGLEDDDRITYYRAALENILDS 172
           P  +  +L  +K  YN+P   +TENG++       S +  LED  R+ Y +  L   L S
Sbjct: 210 PFGLRKILNWIKGNYNNPEIIITENGFSCDGEEDLSGDAALEDTHRVNYLKGYLNQALKS 269

Query: 173 -LDAGVRLKGYMAWSLMDNYEWMAGY 247
            +  GV+L GY  WSLMDN+EW  GY
Sbjct: 270 VIKDGVQLTGYFLWSLMDNFEWDDGY 295



 Score = 43.6 bits (98), Expect = 9e-05
 Identities = 17/31 (54%), Positives = 25/31 (80%)
 Frame = +1

Query: 256 FGLYEVDFSDPARPRTPRKSAFVYKEILRSR 348
           FG++ VDF DP + RTP+KSA V+KEI+ ++
Sbjct: 299 FGVHHVDFDDPHKHRTPKKSALVFKEIVANK 329


>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
 Frame = +2

Query: 5   LMPNSIYDVLTHLKNKYNDPIFYVTENGWA-------TSPEVGLEDDDRITYYRAALENI 163
           ++P  +   L + K+ Y DP   +TENG +       T PE  LEDD R+ ++   +  +
Sbjct: 380 VVPWGLRKFLKYFKDNYGDPEVIITENGCSAPGEYLKTVPE-RLEDDFRVDFFNRYINEV 438

Query: 164 LDSLDA-GVRLKGYMAWSLMDNYEWMAGY 247
             +    GV++KGY AWSLMDN+EW  GY
Sbjct: 439 YKAYKLDGVKVKGYYAWSLMDNFEWFQGY 467



 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +1

Query: 256 FGLYEVDFSDPARPRTPRKSAFVYKEIL 339
           FG++ V+F+DP RPR P+KSA  YK+I+
Sbjct: 471 FGIHFVNFTDPNRPRLPKKSAIFYKKIV 498


>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1143

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 285 SRPPSHPAQVRVRLQGDLEEQGHRP-RLRARHYRH 386
           S P     ++ V  +GDLEE  HRP RL  R+++H
Sbjct: 264 SSPSRQTKELSVYCEGDLEENDHRPSRLHWRNHQH 298


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 71  YVTENGWATSPEVGLEDDDRITYYRAALENILDSLDAGV 187
           Y   N  AT+P   LE DD +       + IL SLD  V
Sbjct: 149 YTENNASATAPSHSLEKDDLLIQREVMSDGILPSLDRTV 187


>SB_20586| Best HMM Match : MerR (HMM E-Value=0.002)
          Length = 150

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 331 EILRSRVIDHDYEPDTTVMTIDEGH*DSIVQATML 435
           E  +++ ++H+ EP   ++T  + H DS+ QA +L
Sbjct: 90  ETSKTKQLEHEIEPLRQLVTAQQSHIDSLKQAMLL 124


>SB_13047| Best HMM Match : Pro_3_hydrox_C (HMM E-Value=7)
          Length = 271

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 71  YVTENGWATSPEVGLEDDDRITYYRAALENILDSLDAGV 187
           Y   N  AT+P   LE DD +       + IL SLD  V
Sbjct: 199 YTENNASATAPSHSLEKDDLLIQREVMSDGILPSLDRTV 237


>SB_37484| Best HMM Match : DUF746 (HMM E-Value=4.1)
          Length = 465

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
 Frame = -2

Query: 298 EGGRDPKSQPRTNRKFGVSCHPFIVIHQTPGHV---ALE-PHSGIETIQNVL 155
           E  R P     T   FGV+C PF+ I     H     LE   +  E +QN+L
Sbjct: 199 EAKRRPDIYQMTRVTFGVNCSPFLAIATVRAHAKKHELEFSKASAELLQNIL 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,933
Number of Sequences: 59808
Number of extensions: 304711
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)