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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0006
         (657 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   1e-11
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.010
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      31   0.83 
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              31   0.83 
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              29   2.5  
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)              29   4.4  
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 28   5.8  

>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +2

Query: 56  EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKK 235
           E +FDEYDYYNFD  +++  G+  K R+K+EA  +TN F P GH RK++ K  N E N+ 
Sbjct: 2   EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNRA 59

Query: 236 TSNTK 250
              +K
Sbjct: 60  AKPSK 64


>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +2

Query: 68  DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEHNKKTSN 244
           D+YD Y+FD   H   G   K ++KKEAS++ N     GHS RK    + + E  +K   
Sbjct: 5   DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRKEEK 61

Query: 245 TK 250
            K
Sbjct: 62  IK 63


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +2

Query: 83  YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 253
           Y  DHD +    GH     T +   EH  +    GH     T     EH+  TS  +H
Sbjct: 327 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 384


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -1

Query: 297  VLLLAIVVY*SAIHQCLVFEVFLLCSAFMSFVTIFLECPDGSKWLVCSDASFLVRCLP 124
            V++L I V+   I    VF + +L        +  L C   S  L CS +SFL+ C P
Sbjct: 1174 VIILFITVFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPCSPSSFLLPCSP 1231


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +2

Query: 83  YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 253
           Y  DHD +    GH     T +   EH  +    GH     T     EH+  TS  +H
Sbjct: 383 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 440


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +2

Query: 176 PSGHSRKIVTKLMNAEHNKKTSNTKH*WIADQ*TTMASRRTIELPNERRTLLR--IPEE 346
           P   S+    KL   E NK     K    +D   + ASR+T+++P +   LLR  +P+E
Sbjct: 318 PKTPSKNTKDKLSQKEANKLREEIK----SDSFNSSASRKTLDIPKKETVLLRRSVPDE 372


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +2

Query: 128 KQRTKKEA--SEHTNHFDPSGHSRKIVTKLMNAEHNKKTSN 244
           K R  K+A  S++  H++   H R +V+KL+   HN   +N
Sbjct: 490 KDRMHKKAIKSKNQQHWEAFKHQRNLVSKLIKDSHNDYLNN 530


>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 44  VNMSEAFFDEYDYYNFDHDKHI 109
           V+  +AF+  +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529


>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
          Length = 420

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 44  VNMSEAFFDEYDYYNFDHDKHI 109
           V+  +AF+  +DYY F HD ++
Sbjct: 66  VSEGKAFYGSFDYYQFPHDSNL 87


>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +2

Query: 47  NMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEH 226
           +++E F + Y+ Y +D      T   G+     E  + ++ + P   SRK  TK+ +   
Sbjct: 294 DIAEDFRERYEAYGYDQHDFPDTSSSGE-----ETLDDSDEWLPGQQSRKTSTKVASGAK 348

Query: 227 NKKTSNTK 250
            +KT   K
Sbjct: 349 KRKTDRGK 356


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 281 MASRRTIELPNERRTLLRIPEEC 349
           + S RT  +PN  RTLL+IP  C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,817,586
Number of Sequences: 59808
Number of extensions: 413180
Number of successful extensions: 971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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