Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30049
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)        42   6e-04
SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)        36   0.049
SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)                  29   5.6  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              28   9.8  
SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_13364| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-21)
          Length = 259

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 25/79 (31%), Positives = 40/79 (50%)
 Frame = +1

Query: 262 LPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVKRSH 441
           L E Y +  Y Y   +WP L ++A   K   VG ++ K++        G+I  LAV++  
Sbjct: 132 LSEPYSIYTYRYFIHNWPNLCFLAM-YKDQCVGAIVCKLDVHKSMVHRGYIAMLAVEKDF 190

Query: 442 RRLGLAQKLMNQASLAMVE 498
           RR  +   L+ +A  AM+E
Sbjct: 191 RRHKIGTALVKKAIRAMIE 209


>SB_49056| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.8e-06)
          Length = 118

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +1

Query: 385 DGEDNRHGHITSLAVKRSHRRLGLAQKLMN 474
           + ++  HGH+T+++V    RRLGLA KLM+
Sbjct: 8   EAQEQWHGHVTAVSVAPEFRRLGLAAKLMS 37


>SB_20020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 62  WYIVWKCCLSKFRFVRELLGG 124
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_16857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 62  WYIVWKCCLSKFRFVRELLGG 124
           W++VWK  L +F F+REL+ G
Sbjct: 17  WFVVWKMFLVRFSFIRELVYG 37


>SB_46979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 238 HAALQLLCLPENYQMKYYFYHGLSWPQLSYV 330
           H   + +  P NY   YY+Y+   +P LSY+
Sbjct: 32  HLPTRPVIFPHNYAYYYYYYYYYYYPALSYI 62


>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
          Length = 1498

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
 Frame = +1

Query: 253 LLCLPENYQMKYYFYHGLSWPQLSYVAEDEKGHIVGYVLAKMEEDGEDNRHGHITSLAVK 432
           +L  P  Y         ++ P  + + EDE G+++G   A  EE    +R  H+T+    
Sbjct: 319 MLSKPTQYDPIDLTMSPINHPPTNSLVEDEDGNVIG--TAGREESVLAHRQAHVTNHVQH 376

Query: 433 RSHRRLGLAQKLMNQASLAMVE----CFQENMCH 522
           +   +     K++  AS A          EN CH
Sbjct: 377 QYDHKFHTVSKIVPNASGAAQHPSGVIRDENTCH 410


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 609  YADGEDAYSMMRDLSAFAVDNKTDSXATDNL 701
            Y+ G D  S  RD+  FA+D+K    A D L
Sbjct: 935  YSRGRDQSSKTRDMDTFAMDHKDADDAIDFL 965


>SB_18605| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1400

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = -3

Query: 576 PKSLCKDSVQLCCFFLHAMTHIFLKAFNHCK*CLIHEFLS*S*STM*SLYS*RCDVTMTI 397
           P++  +D+ QL     H+   ++L++   C  C++ +F   S +   SL+  RC  T  +
Sbjct: 761 PRATAEDNKQLYAHIQHSFD-LYLRSHPDCLVCIVGDFNPNSTNISPSLFHRRCGFTQIV 819


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,213,754
Number of Sequences: 59808
Number of extensions: 438044
Number of successful extensions: 987
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)