Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30027
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   31   1.0  
SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)                    29   2.4  
SB_52551| Best HMM Match : NUC130_3NT (HMM E-Value=6.4)                28   5.6  
SB_39442| Best HMM Match : Hpr_kinase_N (HMM E-Value=4.1)              28   7.4  
SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_20143| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.4  
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 388 KYILFNGHKICGPSDSLILRRSQYRYHGTDMTGCPYRPGARHHPRRRKLLETQQIIYKAL 567
           +Y L + H++C   D L+  R   + H T     P  P  RH  R    L+    + + L
Sbjct: 48  RYYLRDRHRLCFWLDRLVDARDSIQEHVTSFRSTPGNPSKRHRDRLNAELDN---LARLL 104

Query: 568 PRP 576
           P P
Sbjct: 105 PFP 107


>SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)
          Length = 760

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -3

Query: 423 PAYFVSIKQYIFYFRRSQRNLIFNIKLYFLHFAGVDYEIRSVDHKFEYVLLRHAS*EFLN 244
           P+  V +K  I Y++R   + +  +K   LH+ G     R    K +Y++L+     F  
Sbjct: 544 PSSVVRLKNNILYYKRGSPSSVVRLKNNILHYKGGTPVFRGTAEK-QYIILQGRDPVFRG 602

Query: 243 ASE 235
            +E
Sbjct: 603 TAE 605


>SB_52551| Best HMM Match : NUC130_3NT (HMM E-Value=6.4)
          Length = 363

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 29  SFASCIPSLLLILLVSAQTKPQPALVSPC 115
           SF S +  LLL+ L+ +Q++  PAL S C
Sbjct: 126 SFTSQVSLLLLLPLLESQSRTDPALSSSC 154


>SB_39442| Best HMM Match : Hpr_kinase_N (HMM E-Value=4.1)
          Length = 212

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +3

Query: 429 RLSDPATFTVSLSRD*YDWMSLPTGCSPPSSEEEASRNSTNHIQSTTKAGVESNSTKKIE 608
           RL   ATF++S++     W+S+    S P    + S+NS        + GVE +     +
Sbjct: 75  RLPSDATFSLSITFP-EAWLSVTRPESRPVMVSD-SKNSDRDSCGRDERGVEGSYYSNRD 132

Query: 609 NTDVEDFLGG 638
            +++E+FL G
Sbjct: 133 CSEMEEFLAG 142


>SB_31989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 534 SRNSTNHIQSTTKAGVESNSTKKIENTDVED 626
           S +  NHI + T   V+++++  ++NT VED
Sbjct: 278 SCDKANHIANHTTPSVDNSTSTPVDNTTVED 308


>SB_20143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 510 PPSSEEEASRNSTNHIQSTTKAGVESNS 593
           PPS  E+   N+TN  +S  K G  SNS
Sbjct: 104 PPSQWEKKENNTTNSKKSGAKGGKTSNS 131


>SB_32609| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1741

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 552 HIQSTTKAGVESNSTKKIENTDVEDFLGG 638
           H+Q   KA    + TKK      +DFLGG
Sbjct: 293 HVQENKKANNAESKTKKNSKNAPDDFLGG 321


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 510 PPSSEEEASRNSTNHIQSTTKAGVESNS 593
           PPS  E+   N+TN  +S  K G  SNS
Sbjct: 104 PPSQWEKKENNTTNSKKSGAKGGKTSNS 131


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,464,458
Number of Sequences: 59808
Number of extensions: 447196
Number of successful extensions: 1180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)