Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30012
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40065| Best HMM Match : ABC_tran (HMM E-Value=0.0055)               30   0.88 
SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.88 
SB_55578| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   2.0  
SB_49708| Best HMM Match : Homeobox (HMM E-Value=8.1e-30)              29   2.0  
SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0)                        29   2.0  
SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_15827| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  

>SB_40065| Best HMM Match : ABC_tran (HMM E-Value=0.0055)
          Length = 400

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 258 SFSNSETTEVSLF*SNECMMATH--AAACTQAFEILSHRFQNTYTYECYQTQRIILV 422
           +F ++ + +   F SN C+ A    + AC QAF  +S+    T T+  Y T   +L+
Sbjct: 338 TFESNTSLQAVTFVSNACLQAVTFVSNACLQAFIFVSNACLQTITFVSYATTGNLLI 394


>SB_22062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 30.3 bits (65), Expect = 0.88
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 381 MCFEIGEIEFQTLVYTQRRGLPSYIHLIKIKIPQWFLNWKTIHKSEIY---AFI*HNPLT 211
           +C E    +   +V T+R+ L SY+ L + ++  WF N +T  K +       +  NPL+
Sbjct: 145 LCLETSFDKNHYVVGTERKQLASYLKLSETQVKVWFQNRRTKWKRQALEGNTNMHKNPLS 204

Query: 210 PLFR 199
           P  +
Sbjct: 205 PYLK 208


>SB_55578| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 333

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -1

Query: 194 LLFDTMFGHFVILSSTYTFNEIQIFV*Y 111
           L+F T+FG+ +++S  YTF +++    Y
Sbjct: 34  LMFFTLFGNIIVISCFYTFQDLRTICNY 61


>SB_49708| Best HMM Match : Homeobox (HMM E-Value=8.1e-30)
          Length = 197

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 345 LVYTQRRGLPSYIHLIKIKIPQWFLNWKTIHKSE 244
           +V T+R+ L SY++L + +I  WF N +T  K +
Sbjct: 116 IVGTERKQLASYLNLSETQIKVWFQNRRTKWKRQ 149


>SB_6588| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 355

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 194 LLFDTMFGHFVILSSTYTFNEIQIFV*Y 111
           L+  T+FG+F++ +S YTF++++    Y
Sbjct: 29  LMLATLFGNFLVFASFYTFHDLRTICNY 56


>SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 336 TQRRGLPSYIHLIKIKIPQWFLNWKTIHKSEIYA 235
           ++R GL S +HL + ++  WF N +   K +I A
Sbjct: 241 SERAGLASQLHLTETQVKIWFQNRRNKWKRQIAA 274


>SB_15827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 220 IVLYKSIYFGFVNRFPIQKPLRYLYFNQMN 309
           ++L  S  FGF++R P Q  L +LYF  ++
Sbjct: 178 MILISSNMFGFLDRLPRQIHLVWLYFGTLS 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,951,289
Number of Sequences: 59808
Number of extensions: 248427
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)