Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30009
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         101   5e-22
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)              95   3e-20
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   0.84 
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   0.84 
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         31   0.84 
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   0.84 
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                31   0.84 
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.84 
SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)                   28   5.9  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   5.9  
SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)         28   5.9  
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    28   7.8  

>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  101 bits (242), Expect = 5e-22
 Identities = 48/83 (57%), Positives = 53/83 (63%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           +CAAY+HELPRYGVKVGLTNYAAAY TG                          EYNVE 
Sbjct: 12  ICAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVES 71

Query: 434 VDNGPGAFRCYLDVGLARTTTGA 502
           +D  PGAFRC+LDVGLART+TGA
Sbjct: 72  IDGSPGAFRCFLDVGLARTSTGA 94



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 511 GAMKGAVDGGLNVPH 555
           GA+KGAVDGGL +PH
Sbjct: 98  GALKGAVDGGLEIPH 112


>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 41/50 (82%), Positives = 46/50 (92%)
 Frame = +1

Query: 511 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRS 660
           GA+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRS
Sbjct: 193 GALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRS 242



 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 46/83 (55%), Positives = 51/83 (61%)
 Frame = +2

Query: 254 LCAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEP 433
           L +AY+HELP +GVKVGLTNYAAAY TG                          EYNVE 
Sbjct: 107 LASAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVES 166

Query: 434 VDNGPGAFRCYLDVGLARTTTGA 502
           VD  PGAFRC+LDVGLART+TGA
Sbjct: 167 VDGSPGAFRCFLDVGLARTSTGA 189



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +3

Query: 96  RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 221
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604


>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 365 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 405


>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 780

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600  ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
            + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 881  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 600  ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 478
            + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199


>SB_56560| Best HMM Match : GBP_C (HMM E-Value=0.065)
          Length = 557

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 371 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 204
           ++ +  ++L  D ++     L   PS    A+ +NKQ T  V+F P  G LA   F
Sbjct: 180 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 235


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 119 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 12
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_39193| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.029)
          Length = 1769

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 371 QVFEAVFVLIADQLNMLQHNLSDQPSHHNVATHVNKQRTNMVTFNPRVGHLACYIF 204
           ++ +  ++L  D ++     L   PS    A+ +NKQ T  V+F P  G LA   F
Sbjct: 340 KIRQTEWMLNTDLVSFALSELEFSPSIDLFASRLNKQFTRYVSFKPDPGALAVDTF 395


>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 51  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVV 146
           VK+K+  KR   K KR+ + K+D + RK+ ++
Sbjct: 228 VKHKRKQKRKSAKHKRKHKRKSDKHKRKQTLI 259


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = -3

Query: 278 THVNKQRTNMVTFNPRVGHLACY---IFVGETHNQTIFRCVIFVLVLNNEAFTSIII-SF 111
           +HV K  TN+V+  PR    A Y   I+  E  N  +  C +   VL+ + +++ +I SF
Sbjct: 280 SHVFKVMTNVVSMRPRFDFTADYLVRIYRAECVNLRL-HCNLIKGVLDKQGYSAFLIASF 338

Query: 110 P 108
           P
Sbjct: 339 P 339


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 36   GFVKVVKNKQYFKRYQVKFKRRREGKTDY 122
            GF++ +K +    RY VK  R R    DY
Sbjct: 1090 GFIEALKRRDVSSRYNVKHARFRRATNDY 1118


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,952,070
Number of Sequences: 59808
Number of extensions: 437267
Number of successful extensions: 1257
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)